FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1410, 113 aa
  1>>>pF1KE1410 113 - 113 aa - 113 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2282+/-0.000661; mu= 11.4156+/- 0.040
 mean_var=93.7902+/-19.124, 0's: 0 Z-trim(112.9): 68  B-trim: 0 in 0/54
 Lambda= 0.132433
 statistics sampled from 13558 (13629) to 13558 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.419), width:  16
 Scan time:  1.560

The best scores are:                                      opt bits E(32554)
CCDS3118.1 RNF7 gene_id:9616|Hs108|chr3            ( 113)  850 171.2 1.2e-43
CCDS56283.1 RNF7 gene_id:9616|Hs108|chr3           (  97)  439 92.6 4.6e-20
CCDS43158.1 RNF7 gene_id:9616|Hs108|chr3           (  90)  411 87.3 1.8e-18
CCDS14009.1 RBX1 gene_id:9978|Hs108|chr22          ( 108)  392 83.7 2.5e-17


>>CCDS3118.1 RNF7 gene_id:9616|Hs108|chr3                 (113 aa)
 initn: 850 init1: 850 opt: 850  Z-score: 897.2  bits: 171.2 E(32554): 1.2e-43
Smith-Waterman score: 850; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113)

               10        20        30        40        50        60
pF1KE1 MADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDA
               10        20        30        40        50        60

               70        80        90       100       110   
pF1KE1 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK
               70        80        90       100       110   

>>CCDS56283.1 RNF7 gene_id:9616|Hs108|chr3                (97 aa)
 initn: 422 init1: 412 opt: 439  Z-score: 473.6  bits: 92.6 E(32554): 4.6e-20
Smith-Waterman score: 687; 85.8% identity (85.8% similar) in 113 aa overlap (1-113:1-97)

               10        20        30        40        50        60
pF1KE1 MADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::  
CCDS56 MADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQVM--
               10        20        30        40        50          

               70        80        90       100       110   
pF1KE1 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK
                     :::::::::::::::::::::::::::::::::::::::
CCDS56 --------------VVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK
                     60        70        80        90       

>>CCDS43158.1 RNF7 gene_id:9616|Hs108|chr3                (90 aa)
 initn: 432 init1: 401 opt: 411  Z-score: 445.1  bits: 87.3 E(32554): 1.8e-18
Smith-Waterman score: 411; 79.3% identity (86.6% similar) in 82 aa overlap (1-79:1-76)

               10        20        30        40        50          
pF1KE1 MADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQ--VM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::  :.
CCDS43 MADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQMPVL
               10        20        30        40        50        60

       60        70         80        90       100       110   
pF1KE1 DACLRCQAENKQEDCVVVW-GECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK
       :. :.    ::.   .:.: ::                                  
CCDS43 DVKLKT---NKR---TVLWSGENVIIPSTTAACPCG                    
                     70        80        90                    

>>CCDS14009.1 RBX1 gene_id:9978|Hs108|chr22               (108 aa)
 initn: 392 init1: 220 opt: 392  Z-score: 424.5  bits: 83.7 E(32554): 2.5e-17
Smith-Waterman score: 392; 50.5% identity (76.3% similar) in 97 aa overlap (20-112:11-107)

               10        20         30        40        50         
pF1KE1 MADVEDGEETCALASHSGSSGSKSG-GDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMD
                          ::..:: : : : .:::::::.:.::.  :.::::: ..::
CCDS14          MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMD
                        10        20        30        40        50 

      60        70           80        90       100       110   
pF1KE1 ACLRCQAENKQ---EDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK
        :..:::.. .   :.:.:.:: :::.::  :.: :.:  . ::: ...:  :. : 
CCDS14 LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH
              60        70        80        90       100        




113 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:07:44 2016 done: Mon Nov  7 02:07:44 2016
 Total Scan time:  1.560 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]