Result of FASTA (ccds) for
pFN21AE1401
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1401, 114 aa
1>>>pF1KE1401 114 - 114 aa - 114 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7680+/-0.000523; mu= 13.7623+/- 0.032
mean_var=63.5875+/-12.607, 0's: 0 Z-trim(114.8): 31 B-trim: 133 in 1/51
Lambda= 0.160838
statistics sampled from 15280 (15312) to 15280 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.821), E-opt: 0.2 (0.47), width: 16
Scan time: 1.750
The best scores are: opt bits E(32554)
CCDS34006.1 CXCL5 gene_id:6374|Hs108|chr4 ( 114) 741 179.1 5.2e-46
CCDS3560.1 CXCL6 gene_id:6372|Hs108|chr4 ( 114) 599 146.1 4.3e-36
CCDS47074.1 CXCL1 gene_id:2919|Hs108|chr4 ( 107) 313 79.8 3.9e-16
CCDS34007.1 CXCL3 gene_id:2921|Hs108|chr4 ( 107) 297 76.0 5.1e-15
CCDS34008.1 CXCL2 gene_id:2920|Hs108|chr4 ( 107) 293 75.1 9.7e-15
CCDS3563.1 PPBP gene_id:5473|Hs108|chr4 ( 128) 284 73.1 4.7e-14
CCDS3562.1 PF4 gene_id:5196|Hs108|chr4 ( 101) 260 67.4 1.9e-12
>>CCDS34006.1 CXCL5 gene_id:6374|Hs108|chr4 (114 aa)
initn: 741 init1: 741 opt: 741 Z-score: 939.6 bits: 179.1 E(32554): 5.2e-46
Smith-Waterman score: 741; 100.0% identity (100.0% similar) in 114 aa overlap (1-114:1-114)
10 20 30 40 50 60
pF1KE1 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHP
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 KMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
70 80 90 100 110
>>CCDS3560.1 CXCL6 gene_id:6372|Hs108|chr4 (114 aa)
initn: 645 init1: 599 opt: 599 Z-score: 761.5 bits: 146.1 E(32554): 4.3e-36
Smith-Waterman score: 599; 79.8% identity (93.0% similar) in 114 aa overlap (1-114:1-114)
10 20 30 40 50 60
pF1KE1 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHP
::: :::::::::::.::::::.:::::: :::.:::::..::: ::::.::..: :.:
CCDS35 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNP
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 KMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
: :..:::: :::::::::::::::::..::::::::::::::::::.:::.:
CCDS35 KTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN
70 80 90 100 110
>>CCDS47074.1 CXCL1 gene_id:2919|Hs108|chr4 (107 aa)
initn: 354 init1: 283 opt: 313 Z-score: 403.2 bits: 79.8 E(32554): 3.9e-16
Smith-Waterman score: 313; 48.2% identity (76.4% similar) in 110 aa overlap (6-114:2-107)
10 20 30 40 50
pF1KE1 MSLLSSRAARVPGPSSS-LCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVH
.::: .::. : . .:::::. : : :: :.: :::: :::: ::.:
CCDS47 MARAALSAAPSNPRLLRVALLLLLLVAAGRRA-AG--ASVATELRCQCLQTLQGIH
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 PKMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
:: :....: . ::.:...::.:.::::.. ::.: .:..::.:.:.:.. .: :
CCDS47 PKNIQSVNVKSPGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEKMLNS-DKSN
60 70 80 90 100
>>CCDS34007.1 CXCL3 gene_id:2921|Hs108|chr4 (107 aa)
initn: 315 init1: 283 opt: 297 Z-score: 383.1 bits: 76.0 E(32554): 5.1e-15
Smith-Waterman score: 297; 46.9% identity (76.5% similar) in 98 aa overlap (14-111:10-105)
10 20 30 40 50 60
pF1KE1 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHP
::. ..::::: . .:: :.:. :::: :::: ::.:
CCDS34 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAG--ASVVTELRCQCLQTLQGIHL
10 20 30 40 50
70 80 90 100 110
pF1KE1 KMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
: :....: . ::.:...::.:.:::::. ::.: .:...:.:.:::. :.
CCDS34 KNIQSVNVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN
60 70 80 90 100
>>CCDS34008.1 CXCL2 gene_id:2920|Hs108|chr4 (107 aa)
initn: 313 init1: 270 opt: 293 Z-score: 378.1 bits: 75.1 E(32554): 9.7e-15
Smith-Waterman score: 293; 44.3% identity (76.4% similar) in 106 aa overlap (6-110:2-104)
10 20 30 40 50
pF1KE1 MSLLSSRAARVPGPSSS-LCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVH
.::. .::. : . .:::::. . :...: :. :::: :::: ::.:
CCDS34 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLAT---ELRCQCLQTLQGIH
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 PKMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
: :....: . ::.:...::.:.::::.. ::.: .:..::.:.:.: .:
CCDS34 LKNIQSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN
60 70 80 90 100
>>CCDS3563.1 PPBP gene_id:5473|Hs108|chr4 (128 aa)
initn: 327 init1: 284 opt: 284 Z-score: 365.8 bits: 73.1 E(32554): 4.7e-14
Smith-Waterman score: 284; 56.2% identity (90.6% similar) in 64 aa overlap (46-109:60-123)
20 30 40 50 60 70
pF1KE1 SSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHPKMISNLQVFAIGPQC
::::.:..::.:.::: :..:.:.. : .:
CCDS35 LTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSGIHPKNIQSLEVIGKGTHC
30 40 50 60 70 80
80 90 100 110
pF1KE1 SKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
..:::.:.::.:..:::::.:: .::..:: : :
CCDS35 NQVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDESAD
90 100 110 120
>>CCDS3562.1 PF4 gene_id:5196|Hs108|chr4 (101 aa)
initn: 240 init1: 199 opt: 260 Z-score: 337.1 bits: 67.4 E(32554): 1.9e-12
Smith-Waterman score: 260; 40.2% identity (75.3% similar) in 97 aa overlap (15-108:4-100)
10 20 30 40 50
pF1KE1 MSLLSSRAARVPGPSSSLCAL---LVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQG
....:: :..: :: : .: :. : .:.:.:..::.
CCDS35 MSSAAGFCASRPGLLFLGLLLLPLVVAFASAEAEEDGDLQCLCVKTTSQ
10 20 30 40
60 70 80 90 100 110
pF1KE1 VHPKMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
:.:. :..:.:. ::.: ....:.::::..:::: .::. ::.:.:.:.
CCDS35 VRPRHITSLEVIKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES
50 60 70 80 90 100
114 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:09:54 2016 done: Mon Nov 7 02:09:54 2016
Total Scan time: 1.750 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]