Result of FASTA (omim) for
pFN21AE1393
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1393, 93 aa
1>>>pF1KE1393 93 - 93 aa - 93 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8988+/-0.000375; mu= 10.7233+/- 0.023
mean_var=69.9300+/-14.069, 0's: 0 Z-trim(113.7): 78 B-trim: 307 in 1/48
Lambda= 0.153371
statistics sampled from 23096 (23184) to 23096 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.673), E-opt: 0.2 (0.272), width: 16
Scan time: 3.460
The best scores are: opt bits E(85289)
NP_001306130 (OMIM: 123885) protein S100-A8 isofor ( 93) 608 143.0 6.5e-35
NP_002955 (OMIM: 123885) protein S100-A8 isoform d ( 93) 608 143.0 6.5e-35
NP_001306127 (OMIM: 123885) protein S100-A8 isofor ( 101) 608 143.1 6.9e-35
NP_001306126 (OMIM: 123885) protein S100-A8 isofor ( 116) 608 143.1 7.6e-35
NP_001306125 (OMIM: 123885) protein S100-A8 isofor ( 117) 608 143.1 7.7e-35
NP_005612 (OMIM: 603112) protein S100-A12 [Homo sa ( 92) 203 53.4 6.1e-08
NP_005971 (OMIM: 600614) protein S100-P [Homo sapi ( 95) 197 52.1 1.6e-07
NP_006262 (OMIM: 176940) protein S100-A1 [Homo sap ( 94) 186 49.7 8.4e-07
XP_016883913 (OMIM: 176990) PREDICTED: protein S10 ( 92) 181 48.5 1.8e-06
NP_006263 (OMIM: 176990) protein S100-B [Homo sapi ( 92) 181 48.5 1.8e-06
NP_002956 (OMIM: 123886) protein S100-A9 [Homo sap ( 114) 169 46.0 1.3e-05
NP_062427 (OMIM: 114210) protein S100-A4 [Homo sap ( 101) 164 44.8 2.6e-05
NP_002952 (OMIM: 114210) protein S100-A4 [Homo sap ( 101) 164 44.8 2.6e-05
NP_002953 (OMIM: 176991) protein S100-A5 [Homo sap ( 92) 163 44.6 2.8e-05
XP_016857521 (OMIM: 176991) PREDICTED: protein S10 ( 92) 163 44.6 2.8e-05
XP_016857520 (OMIM: 176991) PREDICTED: protein S10 ( 92) 163 44.6 2.8e-05
XP_011508162 (OMIM: 176991) PREDICTED: protein S10 ( 104) 163 44.6 3.1e-05
XP_016857519 (OMIM: 176991) PREDICTED: protein S10 ( 110) 163 44.6 3.2e-05
XP_016857518 (OMIM: 176991) PREDICTED: protein S10 ( 133) 163 44.7 3.7e-05
NP_057274 (OMIM: 611312) cornulin [Homo sapiens] ( 495) 163 45.2 9.9e-05
NP_005969 (OMIM: 176993) protein S100-A2 [Homo sap ( 97) 152 42.2 0.00016
XP_016885330 (OMIM: 302020) PREDICTED: protein S10 ( 79) 150 41.6 0.00018
NP_004048 (OMIM: 302020) protein S100-G [Homo sapi ( 79) 150 41.6 0.00018
NP_570128 (OMIM: 610103) protein S100-Z [Homo sapi ( 99) 151 41.9 0.00019
XP_016864661 (OMIM: 610103) PREDICTED: protein S10 ( 99) 151 41.9 0.00019
XP_011541547 (OMIM: 610103) PREDICTED: protein S10 ( 99) 151 41.9 0.00019
XP_016864662 (OMIM: 610103) PREDICTED: protein S10 ( 99) 151 41.9 0.00019
XP_011541541 (OMIM: 610103) PREDICTED: protein S10 ( 99) 151 41.9 0.00019
XP_011541542 (OMIM: 610103) PREDICTED: protein S10 ( 99) 151 41.9 0.00019
XP_016864660 (OMIM: 610103) PREDICTED: protein S10 ( 99) 151 41.9 0.00019
XP_011541543 (OMIM: 610103) PREDICTED: protein S10 ( 99) 151 41.9 0.00019
XP_011541546 (OMIM: 610103) PREDICTED: protein S10 ( 99) 151 41.9 0.00019
NP_001116437 (OMIM: 613259) repetin [Homo sapiens] ( 784) 158 44.2 0.0003
NP_005611 (OMIM: 603114) protein S100-A11 [Homo sa ( 105) 146 40.9 0.00042
NP_002957 (OMIM: 114085) protein S100-A10 [Homo sa ( 97) 143 40.2 0.00063
NP_055439 (OMIM: 114110) protein S100-A6 [Homo sap ( 90) 141 39.7 0.0008
XP_016857522 (OMIM: 114110) PREDICTED: protein S10 ( 90) 141 39.7 0.0008
NP_002954 (OMIM: 600353) protein S100-A7 [Homo sap ( 101) 136 38.6 0.0019
XP_011507833 (OMIM: 616284) PREDICTED: filaggrin-2 (2239) 150 42.8 0.0023
NP_001014364 (OMIM: 616284) filaggrin-2 [Homo sapi (2391) 150 42.9 0.0024
XP_011508165 (OMIM: 601989) PREDICTED: protein S10 ( 98) 132 37.7 0.0034
NP_005970 (OMIM: 601989) protein S100-A13 [Homo sa ( 98) 132 37.7 0.0034
NP_001019384 (OMIM: 601989) protein S100-A13 [Homo ( 98) 132 37.7 0.0034
NP_001019382 (OMIM: 601989) protein S100-A13 [Homo ( 98) 132 37.7 0.0034
NP_001019383 (OMIM: 601989) protein S100-A13 [Homo ( 98) 132 37.7 0.0034
XP_011508164 (OMIM: 601989) PREDICTED: protein S10 ( 98) 132 37.7 0.0034
XP_011508166 (OMIM: 601989) PREDICTED: protein S10 ( 98) 132 37.7 0.0034
XP_016857525 (OMIM: 601989) PREDICTED: protein S10 ( 98) 132 37.7 0.0034
XP_005245491 (OMIM: 601989) PREDICTED: protein S10 ( 98) 132 37.7 0.0034
NP_001019381 (OMIM: 601989) protein S100-A13 [Homo ( 98) 132 37.7 0.0034
>>NP_001306130 (OMIM: 123885) protein S100-A8 isoform d (93 aa)
initn: 608 init1: 608 opt: 608 Z-score: 747.8 bits: 143.0 E(85289): 6.5e-35
Smith-Waterman score: 608; 100.0% identity (100.0% similar) in 93 aa overlap (1-93:1-93)
10 20 30 40 50 60
pF1KE1 MLTELEKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETECPQYIRKKGADVWFKELDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLTELEKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETECPQYIRKKGADVWFKELDI
10 20 30 40 50 60
70 80 90
pF1KE1 NTDGAVNFQEFLILVIKMGVAAHKKSHEESHKE
:::::::::::::::::::::::::::::::::
NP_001 NTDGAVNFQEFLILVIKMGVAAHKKSHEESHKE
70 80 90
>>NP_002955 (OMIM: 123885) protein S100-A8 isoform d [Ho (93 aa)
initn: 608 init1: 608 opt: 608 Z-score: 747.8 bits: 143.0 E(85289): 6.5e-35
Smith-Waterman score: 608; 100.0% identity (100.0% similar) in 93 aa overlap (1-93:1-93)
10 20 30 40 50 60
pF1KE1 MLTELEKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETECPQYIRKKGADVWFKELDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MLTELEKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETECPQYIRKKGADVWFKELDI
10 20 30 40 50 60
70 80 90
pF1KE1 NTDGAVNFQEFLILVIKMGVAAHKKSHEESHKE
:::::::::::::::::::::::::::::::::
NP_002 NTDGAVNFQEFLILVIKMGVAAHKKSHEESHKE
70 80 90
>>NP_001306127 (OMIM: 123885) protein S100-A8 isoform c (101 aa)
initn: 608 init1: 608 opt: 608 Z-score: 747.4 bits: 143.1 E(85289): 6.9e-35
Smith-Waterman score: 608; 100.0% identity (100.0% similar) in 93 aa overlap (1-93:9-101)
10 20 30 40 50
pF1KE1 MLTELEKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETECPQYIRKKGAD
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MWGKSVGIMLTELEKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETECPQYIRKKGAD
10 20 30 40 50 60
60 70 80 90
pF1KE1 VWFKELDINTDGAVNFQEFLILVIKMGVAAHKKSHEESHKE
:::::::::::::::::::::::::::::::::::::::::
NP_001 VWFKELDINTDGAVNFQEFLILVIKMGVAAHKKSHEESHKE
70 80 90 100
>>NP_001306126 (OMIM: 123885) protein S100-A8 isoform b (116 aa)
initn: 608 init1: 608 opt: 608 Z-score: 746.5 bits: 143.1 E(85289): 7.6e-35
Smith-Waterman score: 608; 100.0% identity (100.0% similar) in 93 aa overlap (1-93:24-116)
10 20 30
pF1KE1 MLTELEKALNSIIDVYHKYSLIKGNFHAVYRDDLKKL
:::::::::::::::::::::::::::::::::::::
NP_001 MSLVSCLSEDLVLFFRWGKSVGIMLTELEKALNSIIDVYHKYSLIKGNFHAVYRDDLKKL
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE1 LETECPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIKMGVAAHKKSHEESHKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LETECPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIKMGVAAHKKSHEESHKE
70 80 90 100 110
>>NP_001306125 (OMIM: 123885) protein S100-A8 isoform a (117 aa)
initn: 608 init1: 608 opt: 608 Z-score: 746.5 bits: 143.1 E(85289): 7.7e-35
Smith-Waterman score: 608; 100.0% identity (100.0% similar) in 93 aa overlap (1-93:25-117)
10 20 30
pF1KE1 MLTELEKALNSIIDVYHKYSLIKGNFHAVYRDDLKK
::::::::::::::::::::::::::::::::::::
NP_001 MSLVSCLSEDLKVLFFRWGKSVGIMLTELEKALNSIIDVYHKYSLIKGNFHAVYRDDLKK
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE1 LLETECPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIKMGVAAHKKSHEESHKE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLETECPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIKMGVAAHKKSHEESHKE
70 80 90 100 110
>>NP_005612 (OMIM: 603112) protein S100-A12 [Homo sapien (92 aa)
initn: 146 init1: 146 opt: 203 Z-score: 263.6 bits: 53.4 E(85289): 6.1e-08
Smith-Waterman score: 203; 39.1% identity (66.3% similar) in 92 aa overlap (2-89:1-92)
10 20 30 40 50
pF1KE1 MLTELEKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETECPQYIR----KKGADVWFK
.:.::. :..:....:.::. ::.: .. . .::.:: : . :. : : :.
NP_005 MTKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQ
10 20 30 40 50
60 70 80 90
pF1KE1 ELDINTDGAVNFQEFLILVIKMGVAAHKKSHEESHKE
:: : : :.::::. :: ::: ..:.:
NP_005 GLDANQDEQVDFQEFISLVAIALKAAHYHTHKE
60 70 80 90
>>NP_005971 (OMIM: 600614) protein S100-P [Homo sapiens] (95 aa)
initn: 190 init1: 114 opt: 197 Z-score: 256.2 bits: 52.1 E(85289): 1.6e-07
Smith-Waterman score: 197; 37.9% identity (69.0% similar) in 87 aa overlap (2-84:1-87)
10 20 30 40 50
pF1KE1 MLTELEKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETECPQYIR----KKGADVWFK
.:::: :.. ::::. .:: .:. ... . .:: :.: : : ... : ..: .:
NP_005 MTELETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLK
10 20 30 40 50
60 70 80 90
pF1KE1 ELDINTDGAVNFQEFLILVIKMGVAAHKKSHEESHKE
.:: : :. :.:.::...: . : ::
NP_005 DLDANGDAQVDFSEFIVFVAAITSACHKYFEKAGLK
60 70 80 90
>>NP_006262 (OMIM: 176940) protein S100-A1 [Homo sapiens (94 aa)
initn: 187 init1: 104 opt: 186 Z-score: 243.1 bits: 49.7 E(85289): 8.4e-07
Smith-Waterman score: 186; 36.2% identity (68.1% similar) in 94 aa overlap (1-90:1-94)
10 20 30 40 50
pF1KE1 MLTELEKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETECPQYIRKK----GADVWFK
: .::: :....:.:.: .: .:. . . . .::.::.:: .. . ..: .:
NP_006 MGSELETAMETLINVFHAHSGKEGDKYKLSKKELKELLQTELSGFLDAQKDVDAVDKVMK
10 20 30 40 50 60
60 70 80 90
pF1KE1 ELDINTDGAVNFQEFLILVIKMGVAAHKKSHEESHKE
::: : :: :.:::...:: . :: .. :.:
NP_006 ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS
70 80 90
>>XP_016883913 (OMIM: 176990) PREDICTED: protein S100-B (92 aa)
initn: 185 init1: 125 opt: 181 Z-score: 237.3 bits: 48.5 E(85289): 1.8e-06
Smith-Waterman score: 181; 33.3% identity (71.3% similar) in 87 aa overlap (2-84:1-87)
10 20 30 40 50
pF1KE1 MLTELEKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETECPQYIR----KKGADVWFK
..:::::. ..:::.:.:: .:. : . ...::.:...: .... .. .: ..
XP_016 MSELEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVME
10 20 30 40 50
60 70 80 90
pF1KE1 ELDINTDGAVNFQEFLILVIKMGVAAHKKSHEESHKE
:: . :: .::::. .: . .: :.
XP_016 TLDNDGDGECDFQEFMAFVAMVTTACHEFFEHE
60 70 80 90
>>NP_006263 (OMIM: 176990) protein S100-B [Homo sapiens] (92 aa)
initn: 185 init1: 125 opt: 181 Z-score: 237.3 bits: 48.5 E(85289): 1.8e-06
Smith-Waterman score: 181; 33.3% identity (71.3% similar) in 87 aa overlap (2-84:1-87)
10 20 30 40 50
pF1KE1 MLTELEKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETECPQYIR----KKGADVWFK
..:::::. ..:::.:.:: .:. : . ...::.:...: .... .. .: ..
NP_006 MSELEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVME
10 20 30 40 50
60 70 80 90
pF1KE1 ELDINTDGAVNFQEFLILVIKMGVAAHKKSHEESHKE
:: . :: .::::. .: . .: :.
NP_006 TLDNDGDGECDFQEFMAFVAMVTTACHEFFEHE
60 70 80 90
93 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:19:34 2016 done: Mon Nov 7 02:19:34 2016
Total Scan time: 3.460 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]