Result of FASTA (omim) for
pFN21AE1389
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1389, 383 aa
1>>>pF1KE1389 383 - 383 aa - 383 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2823+/-0.000404; mu= 16.9379+/- 0.025
mean_var=66.1296+/-13.282, 0's: 0 Z-trim(112.4): 28 B-trim: 1061 in 1/49
Lambda= 0.157716
statistics sampled from 21323 (21347) to 21323 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.25), width: 16
Scan time: 7.790
The best scores are: opt bits E(85289)
NP_001316041 (OMIM: 610497) BRCA1-A complex subuni ( 383) 2626 606.5 3.3e-173
NP_954664 (OMIM: 610497) BRCA1-A complex subunit B ( 383) 2626 606.5 3.3e-173
NP_954661 (OMIM: 610497) BRCA1-A complex subunit B ( 383) 2626 606.5 3.3e-173
NP_001316042 (OMIM: 610497) BRCA1-A complex subuni ( 415) 2497 577.2 2.4e-164
NP_004890 (OMIM: 610497) BRCA1-A complex subunit B ( 415) 2497 577.2 2.4e-164
NP_954663 (OMIM: 610497) BRCA1-A complex subunit B ( 376) 2494 576.5 3.6e-164
NP_954662 (OMIM: 610497) BRCA1-A complex subunit B ( 376) 2494 576.5 3.6e-164
NP_001248769 (OMIM: 610497) BRCA1-A complex subuni ( 379) 2489 575.3 8e-164
NP_001316044 (OMIM: 610497) BRCA1-A complex subuni ( 440) 2489 575.4 9e-164
NP_001316043 (OMIM: 610497) BRCA1-A complex subuni ( 472) 2489 575.4 9.6e-164
>>NP_001316041 (OMIM: 610497) BRCA1-A complex subunit BR (383 aa)
initn: 2626 init1: 2626 opt: 2626 Z-score: 3230.5 bits: 606.5 E(85289): 3.3e-173
Smith-Waterman score: 2626; 100.0% identity (100.0% similar) in 383 aa overlap (1-383:1-383)
10 20 30 40 50 60
pF1KE1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
310 320 330 340 350 360
370 380
pF1KE1 RAKAYFKTFVPQFQEAAFANGKL
:::::::::::::::::::::::
NP_001 RAKAYFKTFVPQFQEAAFANGKL
370 380
>>NP_954664 (OMIM: 610497) BRCA1-A complex subunit BRE i (383 aa)
initn: 2626 init1: 2626 opt: 2626 Z-score: 3230.5 bits: 606.5 E(85289): 3.3e-173
Smith-Waterman score: 2626; 100.0% identity (100.0% similar) in 383 aa overlap (1-383:1-383)
10 20 30 40 50 60
pF1KE1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
310 320 330 340 350 360
370 380
pF1KE1 RAKAYFKTFVPQFQEAAFANGKL
:::::::::::::::::::::::
NP_954 RAKAYFKTFVPQFQEAAFANGKL
370 380
>>NP_954661 (OMIM: 610497) BRCA1-A complex subunit BRE i (383 aa)
initn: 2626 init1: 2626 opt: 2626 Z-score: 3230.5 bits: 606.5 E(85289): 3.3e-173
Smith-Waterman score: 2626; 100.0% identity (100.0% similar) in 383 aa overlap (1-383:1-383)
10 20 30 40 50 60
pF1KE1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
310 320 330 340 350 360
370 380
pF1KE1 RAKAYFKTFVPQFQEAAFANGKL
:::::::::::::::::::::::
NP_954 RAKAYFKTFVPQFQEAAFANGKL
370 380
>>NP_001316042 (OMIM: 610497) BRCA1-A complex subunit BR (415 aa)
initn: 2494 init1: 2494 opt: 2497 Z-score: 3071.4 bits: 577.2 E(85289): 2.4e-164
Smith-Waterman score: 2497; 95.8% identity (96.6% similar) in 385 aa overlap (1-382:1-385)
10 20 30 40 50 60
pF1KE1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
310 320 330 340 350 360
370 380
pF1KE1 RAKA---YFKTFVPQFQEAAFANGKL
:::. . : : ::: .:
NP_001 RAKGCQGSRDACSPWEQVLAFAVAKTGCKLLQPQRNWPSSRGPPWRASEGERTAQ
370 380 390 400 410
>>NP_004890 (OMIM: 610497) BRCA1-A complex subunit BRE i (415 aa)
initn: 2494 init1: 2494 opt: 2497 Z-score: 3071.4 bits: 577.2 E(85289): 2.4e-164
Smith-Waterman score: 2497; 95.8% identity (96.6% similar) in 385 aa overlap (1-382:1-385)
10 20 30 40 50 60
pF1KE1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
310 320 330 340 350 360
370 380
pF1KE1 RAKA---YFKTFVPQFQEAAFANGKL
:::. . : : ::: .:
NP_004 RAKGCQGSRDACSPWEQVLAFAVAKTGCKLLQPQRNWPSSRGPPWRASEGERTAQ
370 380 390 400 410
>>NP_954663 (OMIM: 610497) BRCA1-A complex subunit BRE i (376 aa)
initn: 2494 init1: 2494 opt: 2494 Z-score: 3068.3 bits: 576.5 E(85289): 3.6e-164
Smith-Waterman score: 2494; 100.0% identity (100.0% similar) in 363 aa overlap (1-363:1-363)
10 20 30 40 50 60
pF1KE1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
310 320 330 340 350 360
370 380
pF1KE1 RAKAYFKTFVPQFQEAAFANGKL
:::
NP_954 RAKRESNRDGEESSSA
370
>>NP_954662 (OMIM: 610497) BRCA1-A complex subunit BRE i (376 aa)
initn: 2494 init1: 2494 opt: 2494 Z-score: 3068.3 bits: 576.5 E(85289): 3.6e-164
Smith-Waterman score: 2494; 100.0% identity (100.0% similar) in 363 aa overlap (1-363:1-363)
10 20 30 40 50 60
pF1KE1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
310 320 330 340 350 360
370 380
pF1KE1 RAKAYFKTFVPQFQEAAFANGKL
:::
NP_954 RAKRESNRDGEESSSA
370
>>NP_001248769 (OMIM: 610497) BRCA1-A complex subunit BR (379 aa)
initn: 2489 init1: 2489 opt: 2489 Z-score: 3062.1 bits: 575.3 E(85289): 8e-164
Smith-Waterman score: 2489; 99.5% identity (100.0% similar) in 364 aa overlap (1-364:1-364)
10 20 30 40 50 60
pF1KE1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
310 320 330 340 350 360
370 380
pF1KE1 RAKAYFKTFVPQFQEAAFANGKL
::..
NP_001 RANSRRQHLPMESSRKHQS
370
>>NP_001316044 (OMIM: 610497) BRCA1-A complex subunit BR (440 aa)
initn: 2489 init1: 2489 opt: 2489 Z-score: 3061.2 bits: 575.4 E(85289): 9e-164
Smith-Waterman score: 2489; 98.4% identity (99.7% similar) in 368 aa overlap (1-368:1-368)
10 20 30 40 50 60
pF1KE1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
310 320 330 340 350 360
370 380
pF1KE1 RAKAYFKTFVPQFQEAAFANGKL
::. ....
NP_001 RANEMISSIEKPGHQLLPIQPSSQRKPLTILSACADQAAPGTECLQPSSVSWLPWGRGSR
370 380 390 400 410 420
>>NP_001316043 (OMIM: 610497) BRCA1-A complex subunit BR (472 aa)
initn: 2489 init1: 2489 opt: 2489 Z-score: 3060.7 bits: 575.4 E(85289): 9.6e-164
Smith-Waterman score: 2489; 98.4% identity (99.7% similar) in 368 aa overlap (1-368:1-368)
10 20 30 40 50 60
pF1KE1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
310 320 330 340 350 360
370 380
pF1KE1 RAKAYFKTFVPQFQEAAFANGKL
::. ....
NP_001 RANEMISSIEKPGHQLLPIQPSSQRKPLTILSACADQAAPGTECLQPSSVSWLPWGRGSR
370 380 390 400 410 420
383 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:52:48 2016 done: Mon Nov 7 02:52:49 2016
Total Scan time: 7.790 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]