FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1388, 517 aa
  1>>>pF1KE1388 517 - 517 aa - 517 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5827+/-0.00105; mu= 16.2085+/- 0.063
 mean_var=61.6511+/-12.245, 0's: 0 Z-trim(102.8): 26  B-trim: 3 in 1/48
 Lambda= 0.163344
 statistics sampled from 7086 (7092) to 7086 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.589), E-opt: 0.2 (0.218), width:  16
 Scan time:  2.190

The best scores are:                                      opt bits E(32554)
CCDS3505.1 PPAT gene_id:5471|Hs108|chr4            ( 517) 3445 820.9       0


>>CCDS3505.1 PPAT gene_id:5471|Hs108|chr4                 (517 aa)
 initn: 3445 init1: 3445 opt: 3445  Z-score: 4384.3  bits: 820.9 E(32554):    0
Smith-Waterman score: 3445; 100.0% identity (100.0% similar) in 517 aa overlap (1-517:1-517)

               10        20        30        40        50        60
pF1KE1 MELEELGIREECGVFGCIASGEWPTQLDVPHVITLGLVGLQHRGQESAGIVTSDGSSVPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MELEELGIREECGVFGCIASGEWPTQLDVPHVITLGLVGLQHRGQESAGIVTSDGSSVPT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FKSHKGMGLVNHVFTEDNLKKLYVSNLGIGHTRYATTGKCELENCQPFVVETLHGKIAVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 FKSHKGMGLVNHVFTEDNLKKLYVSNLGIGHTRYATTGKCELENCQPFVVETLHGKIAVA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 HNGELVNAARLRKKLLRHGIGLSTSSDSEMITQLLAYTPPQEQDDTPDWVARIKNLMKEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 HNGELVNAARLRKKLLRHGIGLSTSSDSEMITQLLAYTPPQEQDDTPDWVARIKNLMKEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 PTAYSLLIMHRDVIYAVRDPYGNRPLCIGRLIPVSDINDKEKKTSETEGWVVSSESCSFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PTAYSLLIMHRDVIYAVRDPYGNRPLCIGRLIPVSDINDKEKKTSETEGWVVSSESCSFL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 SIGARYYREVLPGEIVEISRHNVQTLDIISRSEGNPVAFCIFEYVYFARPDSMFEDQMVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SIGARYYREVLPGEIVEISRHNVQTLDIISRSEGNPVAFCIFEYVYFARPDSMFEDQMVY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 TVRYRCGQQLAIEAPVDADLVSTVPESATPAALAYAGKCGLPYVEVLCKNRYVGRTFIQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 TVRYRCGQQLAIEAPVDADLVSTVPESATPAALAYAGKCGLPYVEVLCKNRYVGRTFIQP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 NMRLRQLGVAKKFGVLSDNFKGKRIVLVDDSIVRGNTISPIIKLLKESGAKEVHIRVASP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 NMRLRQLGVAKKFGVLSDNFKGKRIVLVDDSIVRGNTISPIIKLLKESGAKEVHIRVASP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 PIKYPCFMGINIPTKEELIANKPEFDHLAEYLGANSVVYLSVEGLVSSVQEGIKFKKQKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PIKYPCFMGINIPTKEELIANKPEFDHLAEYLGANSVVYLSVEGLVSSVQEGIKFKKQKE
              430       440       450       460       470       480

              490       500       510       
pF1KE1 KKHDIMIQENGNGLECFEKSGHCTACLTGKYPVELEW
       :::::::::::::::::::::::::::::::::::::
CCDS35 KKHDIMIQENGNGLECFEKSGHCTACLTGKYPVELEW
              490       500       510       




517 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:30:28 2016 done: Mon Nov  7 02:30:28 2016
 Total Scan time:  2.190 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]