FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1386, 205 aa
  1>>>pF1KE1386 205 - 205 aa - 205 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6618+/-0.000709; mu= 12.6195+/- 0.043
 mean_var=80.4819+/-16.116, 0's: 0 Z-trim(111.5): 12  B-trim: 0 in 0/51
 Lambda= 0.142963
 statistics sampled from 12389 (12401) to 12389 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.381), width:  16
 Scan time:  2.340

The best scores are:                                      opt bits E(32554)
CCDS4701.1 LTA gene_id:4049|Hs108|chr6             ( 205) 1356 288.4   2e-78
CCDS4702.1 TNF gene_id:7124|Hs108|chr6             ( 233)  305 71.7   4e-13


>>CCDS4701.1 LTA gene_id:4049|Hs108|chr6                  (205 aa)
 initn: 1356 init1: 1356 opt: 1356  Z-score: 1521.4  bits: 288.4 E(32554): 2e-78
Smith-Waterman score: 1356; 99.5% identity (99.5% similar) in 205 aa overlap (1-205:1-205)

               10        20        30        40        50        60
pF1KE1 MTPPERLFLPRVRGTTLHLLLLGLLLVLLPGAQGLPGVGLTPSAAQTARQHPKMHLAHST
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MTPPERLFLPRVCGTTLHLLLLGLLLVLLPGAQGLPGVGLTPSAAQTARQHPKMHLAHST
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LKPAAHLIGDPSKQNSLLWRANTDRAFLQDGFSLSNNSLLVPTSGIYFVYSQVVFSGKAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LKPAAHLIGDPSKQNSLLWRANTDRAFLQDGFSLSNNSLLVPTSGIYFVYSQVVFSGKAY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SPKATSSPLYLAHEVQLFSSQYPFHVPLLSSQKMVYPGLQEPWLHSMYHGAAFQLTQGDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SPKATSSPLYLAHEVQLFSSQYPFHVPLLSSQKMVYPGLQEPWLHSMYHGAAFQLTQGDQ
              130       140       150       160       170       180

              190       200     
pF1KE1 LSTHTDGIPHLVLSPSTVFFGAFAL
       :::::::::::::::::::::::::
CCDS47 LSTHTDGIPHLVLSPSTVFFGAFAL
              190       200     

>>CCDS4702.1 TNF gene_id:7124|Hs108|chr6                  (233 aa)
 initn: 288 init1: 178 opt: 305  Z-score: 349.0  bits: 71.7 E(32554): 4e-13
Smith-Waterman score: 305; 32.4% identity (62.8% similar) in 207 aa overlap (8-205:38-233)

                                      10        20         30      
pF1KE1                        MTPPERLFLPRVRGTTLHLLL-LGLLLVLLPGAQGLP
                                     ::  . .:::  :: .:   :. :  . .:
CCDS47 RDVELAEEALPKKTGGPQGSRRCLFLSLFSFLIVAGATTLFCLLHFG---VIGPQREEFP
        10        20        30        40        50           60    

          40        50        60        70        80        90     
pF1KE1 -GVGLTPSAAQTARQHPKMHLAHSTLKPAAHLIGDPSKQNSLLWRANTDRAFLQDGFSLS
         ..:    ::..:.  .      . ::.::....:. ...: :      :.: .:  : 
CCDS47 RDLSLISPLAQAVRSSSRT----PSDKPVAHVVANPQAEGQLQWLNRRANALLANGVELR
           70        80            90       100       110       120

         100       110       120       130       140       150     
pF1KE1 NNSLLVPTSGIYFVYSQVVFSGKAYSPKATSSPLYLAHEVQLFSSQYPFHVPLLSS----
       .:.:.::. :.:..::::.:.:..  :   :. . :.: .. .. .:  .: :::.    
CCDS47 DNQLVVPSEGLYLIYSQVLFKGQG-CP---STHVLLTHTISRIAVSYQTKVNLLSAIKSP
              130       140           150       160       170      

              160        170       180       190        200     
pF1KE1 -QKMVYPGLQ-EPWLHSMYHGAAFQLTQGDQLSTHTDGIPHLVLSPS-TVFFGAFAL
        :. .  : . .:: . .: :..::: .::.::.. .   .: .. :  :.:: .::
CCDS47 CQRETPEGAEAKPWYEPIYLGGVFQLEKGDRLSAEINRPDYLDFAESGQVYFGIIAL
        180       190       200       210       220       230   




205 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:18:28 2016 done: Sun Nov  6 22:18:28 2016
 Total Scan time:  2.340 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]