Result of FASTA (omim) for
pFN21AE1382
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1382, 113 aa
1>>>pF1KE1382 113 - 113 aa - 113 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.2556+/-0.000263; mu= 16.2630+/- 0.016
mean_var=59.2701+/-11.951, 0's: 0 Z-trim(119.9): 24 B-trim: 1569 in 1/54
Lambda= 0.166593
statistics sampled from 34498 (34523) to 34498 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.788), E-opt: 0.2 (0.405), width: 16
Scan time: 4.900
The best scores are: opt bits E(85289)
NP_003323 (OMIM: 221770,604142) TYRO protein tyros ( 113) 731 182.7 1.1e-46
NP_937758 (OMIM: 221770,604142) TYRO protein tyros ( 112) 714 178.6 1.8e-45
NP_001166985 (OMIM: 221770,604142) TYRO protein ty ( 102) 538 136.3 9.2e-33
NP_001166986 (OMIM: 221770,604142) TYRO protein ty ( 101) 521 132.2 1.6e-31
NP_000723 (OMIM: 186790,615617) T-cell surface gly ( 171) 130 38.5 0.0044
XP_016874032 (OMIM: 186790,615617) PREDICTED: T-ce ( 171) 130 38.5 0.0044
>>NP_003323 (OMIM: 221770,604142) TYRO protein tyrosine (113 aa)
initn: 731 init1: 731 opt: 731 Z-score: 959.3 bits: 182.7 E(85289): 1.1e-46
Smith-Waterman score: 731; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113)
10 20 30 40 50 60
pF1KE1 MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALA
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 VYFLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VYFLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK
70 80 90 100 110
>>NP_937758 (OMIM: 221770,604142) TYRO protein tyrosine (112 aa)
initn: 533 init1: 500 opt: 714 Z-score: 937.3 bits: 178.6 E(85289): 1.8e-45
Smith-Waterman score: 714; 99.1% identity (99.1% similar) in 113 aa overlap (1-113:1-112)
10 20 30 40 50 60
pF1KE1 MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_937 MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALA
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 VYFLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK
::::::::::::::::: :::::::::::::::::::::::::::::::::::
NP_937 VYFLGRLVPRGRGAAEA-TRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK
70 80 90 100 110
>>NP_001166985 (OMIM: 221770,604142) TYRO protein tyrosi (102 aa)
initn: 538 init1: 538 opt: 538 Z-score: 709.2 bits: 136.3 E(85289): 9.2e-33
Smith-Waterman score: 628; 90.3% identity (90.3% similar) in 113 aa overlap (1-113:1-102)
10 20 30 40 50 60
pF1KE1 MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALA
:::::::::::::::::::: :::::::::::::::::::::::::::::
NP_001 MGGLEPCSRLLLLPLLLAVS-----------DCSCSTVSPGVLAGIVMGDLVLTVLIALA
10 20 30 40
70 80 90 100 110
pF1KE1 VYFLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VYFLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK
50 60 70 80 90 100
>>NP_001166986 (OMIM: 221770,604142) TYRO protein tyrosi (101 aa)
initn: 430 init1: 305 opt: 521 Z-score: 687.2 bits: 132.2 E(85289): 1.6e-31
Smith-Waterman score: 611; 89.4% identity (89.4% similar) in 113 aa overlap (1-113:1-101)
10 20 30 40 50 60
pF1KE1 MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALA
:::::::::::::::::::: :::::::::::::::::::::::::::::
NP_001 MGGLEPCSRLLLLPLLLAVS-----------DCSCSTVSPGVLAGIVMGDLVLTVLIALA
10 20 30 40
70 80 90 100 110
pF1KE1 VYFLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK
::::::::::::::::: :::::::::::::::::::::::::::::::::::
NP_001 VYFLGRLVPRGRGAAEA-TRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK
50 60 70 80 90 100
>>NP_000723 (OMIM: 186790,615617) T-cell surface glycopr (171 aa)
initn: 110 init1: 94 opt: 130 Z-score: 176.4 bits: 38.5 E(85289): 0.0044
Smith-Waterman score: 130; 32.9% identity (67.1% similar) in 82 aa overlap (25-105:86-163)
10 20 30 40 50
pF1KE1 MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLT
::.. . :: ..:...:::.. :.. :
NP_000 TRLDLGKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAGIIVTDVIAT
60 70 80 90 100 110
60 70 80 90 100 110
pF1KE1 VLIALAVY-FLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK
.:.::.:. : :. . : :::.. : . .... :: :. . . :: :
NP_000 LLLALGVFCFAGHETGRLSGAADT----QALLRNDQVYQPLRDRDDAQYSHLGGNWARNK
120 130 140 150 160 170
>>XP_016874032 (OMIM: 186790,615617) PREDICTED: T-cell s (171 aa)
initn: 110 init1: 94 opt: 130 Z-score: 176.4 bits: 38.5 E(85289): 0.0044
Smith-Waterman score: 130; 32.9% identity (67.1% similar) in 82 aa overlap (25-105:86-163)
10 20 30 40 50
pF1KE1 MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLT
::.. . :: ..:...:::.. :.. :
XP_016 TRLDLGKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAGIIVTDVIAT
60 70 80 90 100 110
60 70 80 90 100 110
pF1KE1 VLIALAVY-FLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK
.:.::.:. : :. . : :::.. : . .... :: :. . . :: :
XP_016 LLLALGVFCFAGHETGRLSGAADT----QALLRNDQVYQPLRDRDDAQYSHLGGNWARNK
120 130 140 150 160 170
113 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 01:52:21 2016 done: Mon Nov 7 01:52:22 2016
Total Scan time: 4.900 Total Display time: -0.050
Function used was FASTA [36.3.4 Apr, 2011]