FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1382, 113 aa
  1>>>pF1KE1382 113 - 113 aa - 113 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4000+/-0.000551; mu= 15.6691+/- 0.033
 mean_var=61.6560+/-12.082, 0's: 0 Z-trim(113.6): 14  B-trim: 0 in 0/51
 Lambda= 0.163338
 statistics sampled from 14244 (14255) to 14244 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.806), E-opt: 0.2 (0.438), width:  16
 Scan time:  1.750

The best scores are:                                      opt bits E(32554)
CCDS12482.1 TYROBP gene_id:7305|Hs108|chr19        ( 113)  731 179.3 4.3e-46
CCDS46058.1 TYROBP gene_id:7305|Hs108|chr19        ( 112)  714 175.3 6.9e-45
CCDS54255.1 TYROBP gene_id:7305|Hs108|chr19        ( 102)  538 133.8   2e-32
CCDS59378.1 TYROBP gene_id:7305|Hs108|chr19        ( 101)  521 129.8 3.1e-31


>>CCDS12482.1 TYROBP gene_id:7305|Hs108|chr19             (113 aa)
 initn: 731 init1: 731 opt: 731  Z-score: 941.0  bits: 179.3 E(32554): 4.3e-46
Smith-Waterman score: 731; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113)

               10        20        30        40        50        60
pF1KE1 MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALA
               10        20        30        40        50        60

               70        80        90       100       110   
pF1KE1 VYFLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VYFLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK
               70        80        90       100       110   

>>CCDS46058.1 TYROBP gene_id:7305|Hs108|chr19             (112 aa)
 initn: 533 init1: 500 opt: 714  Z-score: 919.4  bits: 175.3 E(32554): 6.9e-45
Smith-Waterman score: 714; 99.1% identity (99.1% similar) in 113 aa overlap (1-113:1-112)

               10        20        30        40        50        60
pF1KE1 MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALA
               10        20        30        40        50        60

               70        80        90       100       110   
pF1KE1 VYFLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK
       ::::::::::::::::: :::::::::::::::::::::::::::::::::::
CCDS46 VYFLGRLVPRGRGAAEA-TRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK
               70         80        90       100       110  

>>CCDS54255.1 TYROBP gene_id:7305|Hs108|chr19             (102 aa)
 initn: 538 init1: 538 opt: 538  Z-score: 695.7  bits: 133.8 E(32554): 2e-32
Smith-Waterman score: 628; 90.3% identity (90.3% similar) in 113 aa overlap (1-113:1-102)

               10        20        30        40        50        60
pF1KE1 MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALA
       ::::::::::::::::::::           :::::::::::::::::::::::::::::
CCDS54 MGGLEPCSRLLLLPLLLAVS-----------DCSCSTVSPGVLAGIVMGDLVLTVLIALA
               10        20                   30        40         

               70        80        90       100       110   
pF1KE1 VYFLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VYFLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK
      50        60        70        80        90       100  

>>CCDS59378.1 TYROBP gene_id:7305|Hs108|chr19             (101 aa)
 initn: 430 init1: 305 opt: 521  Z-score: 674.1  bits: 129.8 E(32554): 3.1e-31
Smith-Waterman score: 611; 89.4% identity (89.4% similar) in 113 aa overlap (1-113:1-101)

               10        20        30        40        50        60
pF1KE1 MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALA
       ::::::::::::::::::::           :::::::::::::::::::::::::::::
CCDS59 MGGLEPCSRLLLLPLLLAVS-----------DCSCSTVSPGVLAGIVMGDLVLTVLIALA
               10        20                   30        40         

               70        80        90       100       110   
pF1KE1 VYFLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK
       ::::::::::::::::: :::::::::::::::::::::::::::::::::::
CCDS59 VYFLGRLVPRGRGAAEA-TRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK
      50        60         70        80        90       100 




113 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:52:21 2016 done: Mon Nov  7 01:52:21 2016
 Total Scan time:  1.750 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]