Result of FASTA (omim) for
pFN21AE1374
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1374, 428 aa
1>>>pF1KE1374 428 - 428 aa - 428 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.7963+/-0.00035; mu= 0.9856+/- 0.022
mean_var=171.8514+/-35.358, 0's: 0 Z-trim(119.7): 47 B-trim: 213 in 1/55
Lambda= 0.097836
statistics sampled from 34004 (34051) to 34004 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.399), width: 16
Scan time: 10.440
The best scores are: opt bits E(85289)
NP_005588 (OMIM: 600729) nuclear factor 1 C-type i ( 428) 2912 423.0 7.2e-118
XP_016882324 (OMIM: 600729) PREDICTED: nuclear fac ( 439) 2871 417.2 4.1e-116
NP_001231933 (OMIM: 600729) nuclear factor 1 C-typ ( 439) 2871 417.2 4.1e-116
NP_001231931 (OMIM: 600729) nuclear factor 1 C-typ ( 508) 2871 417.2 4.6e-116
XP_005259621 (OMIM: 600729) PREDICTED: nuclear fac ( 511) 2871 417.2 4.6e-116
XP_016882323 (OMIM: 600729) PREDICTED: nuclear fac ( 565) 2871 417.3 5.1e-116
XP_016882325 (OMIM: 600729) PREDICTED: nuclear fac ( 419) 2842 413.1 6.7e-115
NP_001231934 (OMIM: 600729) nuclear factor 1 C-typ ( 430) 2801 407.3 3.8e-113
NP_995315 (OMIM: 600729) nuclear factor 1 C-type i ( 499) 2801 407.4 4.3e-113
XP_006722822 (OMIM: 600729) PREDICTED: nuclear fac ( 556) 2801 407.4 4.7e-113
NP_005586 (OMIM: 600727) nuclear factor 1 A-type i ( 498) 1700 252.0 2.6e-66
NP_001128145 (OMIM: 600727) nuclear factor 1 A-typ ( 509) 1700 252.0 2.6e-66
NP_001138984 (OMIM: 600727) nuclear factor 1 A-typ ( 554) 1700 252.0 2.8e-66
XP_016856851 (OMIM: 600727) PREDICTED: nuclear fac ( 490) 1647 244.5 4.6e-64
NP_001138983 (OMIM: 600727) nuclear factor 1 A-typ ( 501) 1647 244.5 4.6e-64
NP_002492 (OMIM: 164005,602535,614753) nuclear fac ( 441) 1617 240.2 7.8e-63
XP_005259975 (OMIM: 164005,602535,614753) PREDICTE ( 502) 1617 240.2 8.7e-63
XP_011539817 (OMIM: 600727) PREDICTED: nuclear fac ( 516) 1613 239.7 1.3e-62
XP_011539814 (OMIM: 600727) PREDICTED: nuclear fac ( 527) 1613 239.7 1.3e-62
NP_005587 (OMIM: 600728) nuclear factor 1 B-type i ( 420) 1580 235.0 2.8e-61
NP_001257973 (OMIM: 164005,602535,614753) nuclear ( 433) 1570 233.6 7.7e-61
XP_005259976 (OMIM: 164005,602535,614753) PREDICTE ( 500) 1571 233.8 7.9e-61
XP_005259977 (OMIM: 164005,602535,614753) PREDICTE ( 494) 1570 233.6 8.6e-61
NP_001257972 (OMIM: 164005,602535,614753) nuclear ( 510) 1570 233.6 8.8e-61
XP_011526342 (OMIM: 164005,602535,614753) PREDICTE ( 518) 1570 233.6 8.9e-61
XP_011539816 (OMIM: 600727) PREDICTED: nuclear fac ( 519) 1560 232.2 2.4e-60
XP_005251527 (OMIM: 600728) PREDICTED: nuclear fac ( 487) 1541 229.5 1.4e-59
NP_001177666 (OMIM: 600728) nuclear factor 1 B-typ ( 494) 1541 229.5 1.5e-59
XP_006716838 (OMIM: 600728) PREDICTED: nuclear fac ( 498) 1541 229.5 1.5e-59
XP_006716837 (OMIM: 600728) PREDICTED: nuclear fac ( 503) 1541 229.5 1.5e-59
XP_005251526 (OMIM: 600728) PREDICTED: nuclear fac ( 561) 1541 229.5 1.6e-59
XP_005251524 (OMIM: 600728) PREDICTED: nuclear fac ( 570) 1541 229.5 1.7e-59
NP_001177667 (OMIM: 600728) nuclear factor 1 B-typ ( 446) 1537 228.9 2e-59
XP_006716836 (OMIM: 600728) PREDICTED: nuclear fac ( 569) 1532 228.3 4e-59
XP_016870229 (OMIM: 600728) PREDICTED: nuclear fac ( 416) 1528 227.6 4.5e-59
XP_016870228 (OMIM: 600728) PREDICTED: nuclear fac ( 419) 1521 226.7 9e-59
XP_005251525 (OMIM: 600728) PREDICTED: nuclear fac ( 566) 1489 222.2 2.7e-57
XP_016870230 (OMIM: 600728) PREDICTED: nuclear fac ( 415) 1469 219.3 1.4e-56
XP_016882326 (OMIM: 164005,602535,614753) PREDICTE ( 400) 1445 215.9 1.5e-55
XP_005259974 (OMIM: 164005,602535,614753) PREDICTE ( 520) 1405 210.3 9.2e-54
XP_006722823 (OMIM: 164005,602535,614753) PREDICTE ( 459) 1399 209.5 1.5e-53
XP_016870231 (OMIM: 600728) PREDICTED: nuclear fac ( 308) 645 103.0 1.1e-21
NP_001269716 (OMIM: 600728) nuclear factor 1 B-typ ( 309) 488 80.8 5.4e-15
XP_005251528 (OMIM: 600728) PREDICTED: nuclear fac ( 318) 488 80.8 5.5e-15
XP_016856852 (OMIM: 600727) PREDICTED: nuclear fac ( 271) 250 47.2 6.2e-05
>>NP_005588 (OMIM: 600729) nuclear factor 1 C-type isofo (428 aa)
initn: 2912 init1: 2912 opt: 2912 Z-score: 2237.1 bits: 423.0 E(85289): 7.2e-118
Smith-Waterman score: 2912; 100.0% identity (100.0% similar) in 428 aa overlap (1-428:1-428)
10 20 30 40 50 60
pF1KE1 MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LLGEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LLGEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 AYFVRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 AYFVRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 TGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 TSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 SGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQ
370 380 390 400 410 420
pF1KE1 PGPSWYLG
::::::::
NP_005 PGPSWYLG
>>XP_016882324 (OMIM: 600729) PREDICTED: nuclear factor (439 aa)
initn: 2871 init1: 2871 opt: 2871 Z-score: 2205.6 bits: 417.2 E(85289): 4.1e-116
Smith-Waterman score: 2871; 100.0% identity (100.0% similar) in 423 aa overlap (1-423:1-423)
10 20 30 40 50 60
pF1KE1 MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LLGEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLGEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 AYFVRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AYFVRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 TGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 TSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 SGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQ
370 380 390 400 410 420
pF1KE1 PGPSWYLG
:::
XP_016 PGPPTLRPTRPLQTVPLWD
430
>>NP_001231933 (OMIM: 600729) nuclear factor 1 C-type is (439 aa)
initn: 2871 init1: 2871 opt: 2871 Z-score: 2205.6 bits: 417.2 E(85289): 4.1e-116
Smith-Waterman score: 2871; 100.0% identity (100.0% similar) in 423 aa overlap (1-423:1-423)
10 20 30 40 50 60
pF1KE1 MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LLGEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLGEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 AYFVRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AYFVRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 TGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 TSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 SGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQ
370 380 390 400 410 420
pF1KE1 PGPSWYLG
:::
NP_001 PGPPTLRPTRPLQTVPLWD
430
>>NP_001231931 (OMIM: 600729) nuclear factor 1 C-type is (508 aa)
initn: 2871 init1: 2871 opt: 2871 Z-score: 2204.7 bits: 417.2 E(85289): 4.6e-116
Smith-Waterman score: 2871; 100.0% identity (100.0% similar) in 423 aa overlap (1-423:1-423)
10 20 30 40 50 60
pF1KE1 MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LLGEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLGEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 AYFVRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AYFVRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 TGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 TSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 SGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQ
370 380 390 400 410 420
pF1KE1 PGPSWYLG
:::
NP_001 PGPLNGSGQLKMPSHCLSAQMLAPPPPGLPRLALPPATKPATTSEGGATSPTSPSYSPPD
430 440 450 460 470 480
>>XP_005259621 (OMIM: 600729) PREDICTED: nuclear factor (511 aa)
initn: 2871 init1: 2871 opt: 2871 Z-score: 2204.6 bits: 417.2 E(85289): 4.6e-116
Smith-Waterman score: 2871; 100.0% identity (100.0% similar) in 423 aa overlap (1-423:1-423)
10 20 30 40 50 60
pF1KE1 MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LLGEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLGEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 AYFVRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AYFVRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 TGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 TSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 SGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQ
370 380 390 400 410 420
pF1KE1 PGPSWYLG
:::
XP_005 PGPLNGSGQLKMPSHCLSAQMLAPPPPGLPRLALPPATKPATTSEGGATSPTSPFLVSGI
430 440 450 460 470 480
>>XP_016882323 (OMIM: 600729) PREDICTED: nuclear factor (565 aa)
initn: 2871 init1: 2871 opt: 2871 Z-score: 2203.9 bits: 417.3 E(85289): 5.1e-116
Smith-Waterman score: 2871; 100.0% identity (100.0% similar) in 423 aa overlap (1-423:1-423)
10 20 30 40 50 60
pF1KE1 MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LLGEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLGEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 AYFVRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AYFVRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 TGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 TSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 SGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQ
370 380 390 400 410 420
pF1KE1 PGPSWYLG
:::
XP_016 PGPLNGSGQLKMPSHCLSAQMLAPPPPGLPRLALPPATKPATTSEGGATSPTSPSYSPPD
430 440 450 460 470 480
>>XP_016882325 (OMIM: 600729) PREDICTED: nuclear factor (419 aa)
initn: 2842 init1: 2842 opt: 2842 Z-score: 2183.8 bits: 413.1 E(85289): 6.7e-115
Smith-Waterman score: 2842; 100.0% identity (100.0% similar) in 418 aa overlap (11-428:2-419)
10 20 30 40 50 60
pF1KE1 MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 LLGEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLGEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDC
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYL
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 AYFVRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AYFVRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE1 TGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE1 TSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVH
300 310 320 330 340 350
370 380 390 400 410 420
pF1KE1 SGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQ
360 370 380 390 400 410
pF1KE1 PGPSWYLG
::::::::
XP_016 PGPSWYLG
>>NP_001231934 (OMIM: 600729) nuclear factor 1 C-type is (430 aa)
initn: 2801 init1: 2801 opt: 2801 Z-score: 2152.4 bits: 407.3 E(85289): 3.8e-113
Smith-Waterman score: 2801; 100.0% identity (100.0% similar) in 413 aa overlap (11-423:2-414)
10 20 30 40 50 60
pF1KE1 MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 LLGEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLGEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDC
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYL
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 AYFVRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AYFVRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE1 TGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE1 TSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVH
300 310 320 330 340 350
370 380 390 400 410 420
pF1KE1 SGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQ
360 370 380 390 400 410
pF1KE1 PGPSWYLG
:::
NP_001 PGPPTLRPTRPLQTVPLWD
420 430
>>NP_995315 (OMIM: 600729) nuclear factor 1 C-type isofo (499 aa)
initn: 2801 init1: 2801 opt: 2801 Z-score: 2151.4 bits: 407.4 E(85289): 4.3e-113
Smith-Waterman score: 2801; 100.0% identity (100.0% similar) in 413 aa overlap (11-423:2-414)
10 20 30 40 50 60
pF1KE1 MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_995 MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 LLGEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_995 LLGEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDC
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_995 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYL
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 AYFVRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_995 AYFVRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE1 TGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_995 TGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE1 TSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_995 TSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVH
300 310 320 330 340 350
370 380 390 400 410 420
pF1KE1 SGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_995 SGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQ
360 370 380 390 400 410
pF1KE1 PGPSWYLG
:::
NP_995 PGPLNGSGQLKMPSHCLSAQMLAPPPPGLPRLALPPATKPATTSEGGATSPTSPSYSPPD
420 430 440 450 460 470
>>XP_006722822 (OMIM: 600729) PREDICTED: nuclear factor (556 aa)
initn: 2801 init1: 2801 opt: 2801 Z-score: 2150.7 bits: 407.4 E(85289): 4.7e-113
Smith-Waterman score: 2801; 100.0% identity (100.0% similar) in 413 aa overlap (11-423:2-414)
10 20 30 40 50 60
pF1KE1 MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 LLGEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LLGEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDC
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYL
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 AYFVRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AYFVRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE1 TGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE1 TSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TSPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRLSSFTQHHRPVIAVH
300 310 320 330 340 350
370 380 390 400 410 420
pF1KE1 SGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SGIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQ
360 370 380 390 400 410
pF1KE1 PGPSWYLG
:::
XP_006 PGPLNGSGQLKMPSHCLSAQMLAPPPPGLPRLALPPATKPATTSEGGATSPTSPSYSPPD
420 430 440 450 460 470
428 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 01:44:00 2016 done: Mon Nov 7 01:44:01 2016
Total Scan time: 10.440 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]