FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1371, 195 aa
  1>>>pF1KE1371 195 - 195 aa - 195 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3389+/-0.000737; mu= 2.4733+/- 0.045
 mean_var=199.3295+/-38.920, 0's: 0 Z-trim(117.1): 3  B-trim: 0 in 0/56
 Lambda= 0.090842
 statistics sampled from 17775 (17777) to 17775 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.831), E-opt: 0.2 (0.546), width:  16
 Scan time:  2.080

The best scores are:                                      opt bits E(32554)
CCDS32504.1 CYBA gene_id:1535|Hs108|chr16          ( 195) 1321 184.0 5.2e-47


>>CCDS32504.1 CYBA gene_id:1535|Hs108|chr16               (195 aa)
 initn: 1321 init1: 1321 opt: 1321  Z-score: 957.5  bits: 184.0 E(32554): 5.2e-47
Smith-Waterman score: 1321; 99.5% identity (100.0% similar) in 195 aa overlap (1-195:1-195)

               10        20        30        40        50        60
pF1KE1 MGQIEWAMWANEQALASGLILITGGIVATAGRFTQWYFGAYSIVAGVFVCLLEYPRGKRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MGQIEWAMWANEQALASGLILITGGIVATAGRFTQWYFGAYSIVAGVFVCLLEYPRGKRK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KGSTMERWGQKYMTAVVKLFGPFTRNYYVRAVLHLLLSVPAGFLLATILGTACLAIASGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KGSTMERWGQKYMTAVVKLFGPFTRNYYVRAVLHLLLSVPAGFLLATILGTACLAIASGI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 YLLAAVRGEQWTPIEPKPRERPQIGGTIKQPPSNPPPRPPAEARKKPSEEEAAAAAGGPP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::
CCDS32 YLLAAVRGEQWTPIEPKPRERPQIGGTIKQPPSNPPPRPPAEARKKPSEEEAAVAAGGPP
              130       140       150       160       170       180

              190     
pF1KE1 GGPQVNPIPVTDEVV
       :::::::::::::::
CCDS32 GGPQVNPIPVTDEVV
              190     




195 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:16:09 2016 done: Mon Nov  7 02:16:10 2016
 Total Scan time:  2.080 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]