FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1366, 297 aa
  1>>>pF1KE1366 297 - 297 aa - 297 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8631+/-0.000797; mu= 14.0673+/- 0.048
 mean_var=88.6271+/-17.251, 0's: 0 Z-trim(109.8): 23  B-trim: 70 in 1/50
 Lambda= 0.136236
 statistics sampled from 11087 (11110) to 11087 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.341), width:  16
 Scan time:  2.610

The best scores are:                                      opt bits E(32554)
CCDS31570.1 MS4A1 gene_id:931|Hs108|chr11          ( 297) 1946 392.0 2.9e-109


>>CCDS31570.1 MS4A1 gene_id:931|Hs108|chr11               (297 aa)
 initn: 1946 init1: 1946 opt: 1946  Z-score: 2075.1  bits: 392.0 E(32554): 2.9e-109
Smith-Waterman score: 1946; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:1-297)

               10        20        30        40        50        60
pF1KE1 MTTPRNSVNGTFPAEPMKGPIAMQSGPKPLFRRMSSLVGPTQSFFMRESKTLGAVQIMNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MTTPRNSVNGTFPAEPMKGPIAMQSGPKPLFRRMSSLVGPTQSFFMRESKTLGAVQIMNG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LFHIALGGLLMIPAGIYAPICVTVWYPLWGGIMYIISGSLLAATEKNSRKCLVKGKMIMN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LFHIALGGLLMIPAGIYAPICVTVWYPLWGGIMYIISGSLLAATEKNSRKCLVKGKMIMN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SLSLFAAISGMILSIMDILNIKISHFLKMESLNFIRAHTPYINIYNCEPANPSEKNSPST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SLSLFAAISGMILSIMDILNIKISHFLKMESLNFIRAHTPYINIYNCEPANPSEKNSPST
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 QYCYSIQSLFLGILSVMLIFAFFQELVIAGIVENEWKRTCSRPKSNIVLLSAEEKKEQTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QYCYSIQSLFLGILSVMLIFAFFQELVIAGIVENEWKRTCSRPKSNIVLLSAEEKKEQTI
              190       200       210       220       230       240

              250       260       270       280       290       
pF1KE1 EIKEEVVGLTETSSQPKNEEDIEIIPIQEEEEEETETNFPEPPQDQESSPIENDSSP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EIKEEVVGLTETSSQPKNEEDIEIIPIQEEEEEETETNFPEPPQDQESSPIENDSSP
              250       260       270       280       290       




297 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 23:23:33 2016 done: Sun Nov  6 23:23:33 2016
 Total Scan time:  2.610 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]