Result of FASTA (omim) for
pFN21AE1361
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1361, 99 aa
1>>>pF1KE1361 99 - 99 aa - 99 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.3860+/-0.000296; mu= 14.3259+/- 0.018
mean_var=55.8262+/-11.079, 0's: 0 Z-trim(117.4): 57 B-trim: 46 in 1/51
Lambda= 0.171654
statistics sampled from 29306 (29364) to 29306 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.344), width: 16
Scan time: 4.310
The best scores are: opt bits E(85289)
NP_000575 (OMIM: 146930) interleukin-8 precursor [ ( 99) 653 168.8 1.3e-42
NP_001502 (OMIM: 155730) growth-regulated alpha pr ( 107) 238 66.1 1.2e-11
NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 p ( 107) 235 65.3 2e-11
NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 p ( 107) 225 62.8 1.1e-10
NP_002695 (OMIM: 121010) platelet basic protein pr ( 128) 221 61.9 2.5e-10
NP_002985 (OMIM: 600324) C-X-C motif chemokine 5 p ( 114) 220 61.6 2.7e-10
NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 p ( 114) 196 55.7 1.7e-08
XP_005265753 (OMIM: 173460) PREDICTED: platelet fa ( 110) 193 54.9 2.7e-08
NP_002610 (OMIM: 173460) platelet factor 4 precurs ( 101) 190 54.2 4.3e-08
NP_002611 (OMIM: 173461) platelet factor 4 variant ( 104) 183 52.4 1.4e-07
NP_006410 (OMIM: 605149) C-X-C motif chemokine 13 ( 109) 181 51.9 2.1e-07
XP_006714126 (OMIM: 605149) PREDICTED: C-X-C motif ( 109) 181 51.9 2.1e-07
NP_954637 (OMIM: 600835,609423) stromal cell-deriv ( 89) 164 47.7 3.4e-06
NP_000600 (OMIM: 600835,609423) stromal cell-deriv ( 93) 164 47.7 3.5e-06
NP_001029058 (OMIM: 600835,609423) stromal cell-de ( 119) 164 47.8 4.2e-06
NP_001171605 (OMIM: 600835,609423) stromal cell-de ( 140) 161 47.1 7.9e-06
NP_002979 (OMIM: 603757) C-C motif chemokine 18 pr ( 89) 155 45.4 1.6e-05
NP_001001437 (OMIM: 609468) C-C motif chemokine 3- ( 93) 153 45.0 2.3e-05
NP_066286 (OMIM: 601395,609423) C-C motif chemokin ( 93) 153 45.0 2.3e-05
NP_002976 (OMIM: 187011) C-C motif chemokine 5 iso ( 91) 151 44.5 3.2e-05
NP_002407 (OMIM: 601704) C-X-C motif chemokine 9 p ( 125) 152 44.8 3.4e-05
NP_005399 (OMIM: 601391) C-C motif chemokine 13 pr ( 98) 142 42.3 0.00016
NP_001556 (OMIM: 147310) C-X-C motif chemokine 10 ( 98) 141 42.0 0.00019
NP_002974 (OMIM: 182283,609423) C-C motif chemokin ( 92) 138 41.2 0.0003
NP_996890 (OMIM: 603782) C-C motif chemokine 4-lik ( 92) 138 41.2 0.0003
NP_002977 (OMIM: 600807,601156,609423) eotaxin pre ( 97) 137 41.0 0.00037
NP_006264 (OMIM: 158106) C-C motif chemokine 7 pre ( 99) 136 40.8 0.00045
NP_002975 (OMIM: 182284) C-C motif chemokine 4 pre ( 92) 134 40.2 0.00059
NP_004582 (OMIM: 601960) C-C motif chemokine 20 is ( 96) 131 39.5 0.001
NP_005614 (OMIM: 602283) C-C motif chemokine 8 pre ( 99) 129 39.0 0.0015
NP_002973 (OMIM: 158105,182940,607948,609423) C-C ( 99) 128 38.8 0.0018
NP_001123518 (OMIM: 601960) C-C motif chemokine 20 ( 95) 126 38.3 0.0024
NP_001278397 (OMIM: 610757) C-C motif chemokine 4- ( 87) 120 36.8 0.0063
>>NP_000575 (OMIM: 146930) interleukin-8 precursor [Homo (99 aa)
initn: 653 init1: 653 opt: 653 Z-score: 886.1 bits: 168.8 E(85289): 1.3e-42
Smith-Waterman score: 653; 100.0% identity (100.0% similar) in 99 aa overlap (1-99:1-99)
10 20 30 40 50 60
pF1KE1 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPH
10 20 30 40 50 60
70 80 90
pF1KE1 CANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS
:::::::::::::::::::::::::::::::::::::::
NP_000 CANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS
70 80 90
>>NP_001502 (OMIM: 155730) growth-regulated alpha protei (107 aa)
initn: 236 init1: 172 opt: 238 Z-score: 330.2 bits: 66.1 E(85289): 1.2e-11
Smith-Waterman score: 238; 43.8% identity (70.8% similar) in 89 aa overlap (5-93:16-101)
10 20 30 40
pF1KE1 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFI
: :::: .:..:. . :. : ::::::..: . .::: :
NP_001 MARAALSAAPSNPRLLRVALLLLLLVAAG--RRAAGASVATELRCQCLQTL-QGIHPKNI
10 20 30 40 50
50 60 70 80 90
pF1KE1 KELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS
. . : :::::.::.:. :..::. ::.: :....::.:
NP_001 QSVNVKSPGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEKMLNSDKSN
60 70 80 90 100
>>NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 precu (107 aa)
initn: 213 init1: 148 opt: 235 Z-score: 326.2 bits: 65.3 E(85289): 2e-11
Smith-Waterman score: 235; 41.7% identity (70.8% similar) in 96 aa overlap (5-99:16-107)
10 20 30 40
pF1KE1 MTSKLAVALLAAFLISAAL-CEGAVLPRSAKELRCQCIKTYSKPFHPKF
: :::: .:..:. :: : : ::::::..: . .: :
NP_002 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPL---ATELRCQCLQTL-QGIHLKN
10 20 30 40 50
50 60 70 80 90
pF1KE1 IKELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS
:. ..: :::::.::.:. :..:.. ::.: :....::.:: ....
NP_002 IQSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN
60 70 80 90 100
>>NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 precu (107 aa)
initn: 215 init1: 150 opt: 225 Z-score: 312.8 bits: 62.8 E(85289): 1.1e-10
Smith-Waterman score: 225; 40.7% identity (70.3% similar) in 91 aa overlap (5-95:16-103)
10 20 30 40
pF1KE1 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFI
: :::: .:..:. . :. . ::::::..: . .: : :
NP_002 MAHATLSAAPSNPRLLRVALLLLLLVAAS--RRAAGASVVTELRCQCLQTL-QGIHLKNI
10 20 30 40 50
50 60 70 80 90
pF1KE1 KELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS
. . : :::::.::.:. :..:.. ::.: ::...::.:..
NP_002 QSVNVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN
60 70 80 90 100
>>NP_002695 (OMIM: 121010) platelet basic protein prepro (128 aa)
initn: 199 init1: 150 opt: 221 Z-score: 306.4 bits: 61.9 E(85289): 2.5e-10
Smith-Waterman score: 221; 47.8% identity (75.4% similar) in 69 aa overlap (31-99:60-127)
10 20 30 40 50 60
pF1KE1 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPH
::::.:::: : .::: :. :.:: .: :
NP_002 LTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSG-IHPKNIQSLEVIGKGTH
30 40 50 60 70 80
70 80 90
pF1KE1 CANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS
: ..:.:. :.:::..:::: ....:.: : :..
NP_002 CNQVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDESAD
90 100 110 120
>>NP_002985 (OMIM: 600324) C-X-C motif chemokine 5 precu (114 aa)
initn: 236 init1: 174 opt: 220 Z-score: 305.8 bits: 61.6 E(85289): 2.7e-10
Smith-Waterman score: 220; 34.0% identity (77.7% similar) in 94 aa overlap (2-93:15-107)
10 20 30 40
pF1KE1 MTSKLAVALLAAFLISAALCEGAVLPRSA--KELRCQCIKTYSKPFH
.:.: . :. .:.. ... : .: .:::: :..: .. :
NP_002 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQT-TQGVH
10 20 30 40 50
50 60 70 80 90
pF1KE1 PKFIKELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS
::.:..:.:. ::.:...:....:..:.:.::::. ....:..:.:
NP_002 PKMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
60 70 80 90 100 110
>>NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 precu (114 aa)
initn: 203 init1: 160 opt: 196 Z-score: 273.7 bits: 55.7 E(85289): 1.7e-08
Smith-Waterman score: 196; 37.1% identity (80.0% similar) in 70 aa overlap (26-93:39-107)
10 20 30 40 50
pF1KE1 MTSKLAVALLAAFLISAALCEGAVLPRSA--KELRCQCIKTYSKPFHPKFIKELR
: :: :::: :... . .:: : .:.
NP_002 ARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLR-VNPKTIGKLQ
10 20 30 40 50 60
60 70 80 90
pF1KE1 VIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS
:. .::.:...:....:..:...::::. ....:..:.:
NP_002 VFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN
70 80 90 100 110
>>XP_005265753 (OMIM: 173460) PREDICTED: platelet factor (110 aa)
initn: 131 init1: 131 opt: 193 Z-score: 269.9 bits: 54.9 E(85289): 2.7e-08
Smith-Waterman score: 193; 36.7% identity (72.2% similar) in 79 aa overlap (19-94:32-109)
10 20 30 40
pF1KE1 MTSKLAVALLAAFLISAALCEGAVLPRSAKE---LRCQCIKTYSKPFH
: :.:. :.: :.: :.:: :. .
XP_005 ITATLNGEPAECLATVPGAAPAPPTWLEQLLSGGGVIYAEAEEDGDLQCLCVKTTSQ-VR
10 20 30 40 50 60
50 60 70 80 90
pF1KE1 PKFIKELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS
:. : :.::..:::: ....:. :..::..::: . .....:.:.
XP_005 PRHITSLEVIKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES
70 80 90 100 110
>>NP_002610 (OMIM: 173460) platelet factor 4 precursor [ (101 aa)
initn: 131 init1: 131 opt: 190 Z-score: 266.3 bits: 54.2 E(85289): 4.3e-08
Smith-Waterman score: 190; 29.3% identity (71.7% similar) in 92 aa overlap (3-94:10-100)
10 20 30 40 50
pF1KE1 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELR
:. .. .:. .:. .. ... . .:.: :.:: :. .:. : :.
NP_002 MSSAAGFCASRPGLLFLGLLLLPLVVAFASAEAEEDGDLQCLCVKTTSQ-VRPRHITSLE
10 20 30 40 50
60 70 80 90
pF1KE1 VIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS
::..:::: ....:. :..::..::: . .....:.:.
NP_002 VIKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES
60 70 80 90 100
>>NP_002611 (OMIM: 173461) platelet factor 4 variant pre (104 aa)
initn: 131 init1: 131 opt: 183 Z-score: 256.8 bits: 52.4 E(85289): 1.4e-07
Smith-Waterman score: 183; 28.3% identity (69.6% similar) in 92 aa overlap (3-94:13-103)
10 20 30 40 50
pF1KE1 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIK
.. . .:: .:. ... . . . .:.: :.:: :. .:. :
NP_002 MSSAARSRLTRATRQEMLFLALLLLPVVVAFARAEAEEDGDLQCLCVKTTSQ-VRPRHIT
10 20 30 40 50
60 70 80 90
pF1KE1 ELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS
:.::..:::: ....:. :..::..::: . ...... :.
NP_002 SLEVIKAGPHCPTAQLIATLKNGRKICLDLQALLYKKIIKEHLES
60 70 80 90 100
99 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 01:31:26 2016 done: Mon Nov 7 01:31:26 2016
Total Scan time: 4.310 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]