Result of FASTA (ccds) for
pFN21AE1361
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1361, 99 aa
1>>>pF1KE1361 99 - 99 aa - 99 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.3797+/-0.000614; mu= 14.2516+/- 0.037
mean_var=54.2623+/-10.855, 0's: 0 Z-trim(110.8): 43 B-trim: 593 in 1/49
Lambda= 0.174111
statistics sampled from 11817 (11860) to 11817 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.364), width: 16
Scan time: 1.390
The best scores are: opt bits E(32554)
CCDS34005.1 CXCL8 gene_id:3576|Hs108|chr4 ( 99) 653 170.9 1.1e-43
CCDS47074.1 CXCL1 gene_id:2919|Hs108|chr4 ( 107) 238 66.7 2.8e-12
CCDS34008.1 CXCL2 gene_id:2920|Hs108|chr4 ( 107) 235 66.0 4.8e-12
CCDS34007.1 CXCL3 gene_id:2921|Hs108|chr4 ( 107) 225 63.5 2.7e-11
CCDS3563.1 PPBP gene_id:5473|Hs108|chr4 ( 128) 221 62.5 6.3e-11
CCDS34006.1 CXCL5 gene_id:6374|Hs108|chr4 ( 114) 220 62.2 6.8e-11
>>CCDS34005.1 CXCL8 gene_id:3576|Hs108|chr4 (99 aa)
initn: 653 init1: 653 opt: 653 Z-score: 897.7 bits: 170.9 E(32554): 1.1e-43
Smith-Waterman score: 653; 100.0% identity (100.0% similar) in 99 aa overlap (1-99:1-99)
10 20 30 40 50 60
pF1KE1 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPH
10 20 30 40 50 60
70 80 90
pF1KE1 CANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS
:::::::::::::::::::::::::::::::::::::::
CCDS34 CANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS
70 80 90
>>CCDS47074.1 CXCL1 gene_id:2919|Hs108|chr4 (107 aa)
initn: 236 init1: 172 opt: 238 Z-score: 333.8 bits: 66.7 E(32554): 2.8e-12
Smith-Waterman score: 238; 43.8% identity (70.8% similar) in 89 aa overlap (5-93:16-101)
10 20 30 40
pF1KE1 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFI
: :::: .:..:. . :. : ::::::..: . .::: :
CCDS47 MARAALSAAPSNPRLLRVALLLLLLVAAG--RRAAGASVATELRCQCLQTL-QGIHPKNI
10 20 30 40 50
50 60 70 80 90
pF1KE1 KELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS
. . : :::::.::.:. :..::. ::.: :....::.:
CCDS47 QSVNVKSPGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEKMLNSDKSN
60 70 80 90 100
>>CCDS34008.1 CXCL2 gene_id:2920|Hs108|chr4 (107 aa)
initn: 213 init1: 148 opt: 235 Z-score: 329.8 bits: 66.0 E(32554): 4.8e-12
Smith-Waterman score: 235; 41.7% identity (70.8% similar) in 96 aa overlap (5-99:16-107)
10 20 30 40
pF1KE1 MTSKLAVALLAAFLISAAL-CEGAVLPRSAKELRCQCIKTYSKPFHPKF
: :::: .:..:. :: : : ::::::..: . .: :
CCDS34 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPL---ATELRCQCLQTL-QGIHLKN
10 20 30 40 50
50 60 70 80 90
pF1KE1 IKELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS
:. ..: :::::.::.:. :..:.. ::.: :....::.:: ....
CCDS34 IQSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN
60 70 80 90 100
>>CCDS34007.1 CXCL3 gene_id:2921|Hs108|chr4 (107 aa)
initn: 215 init1: 150 opt: 225 Z-score: 316.2 bits: 63.5 E(32554): 2.7e-11
Smith-Waterman score: 225; 40.7% identity (70.3% similar) in 91 aa overlap (5-95:16-103)
10 20 30 40
pF1KE1 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFI
: :::: .:..:. . :. . ::::::..: . .: : :
CCDS34 MAHATLSAAPSNPRLLRVALLLLLLVAAS--RRAAGASVVTELRCQCLQTL-QGIHLKNI
10 20 30 40 50
50 60 70 80 90
pF1KE1 KELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS
. . : :::::.::.:. :..:.. ::.: ::...::.:..
CCDS34 QSVNVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN
60 70 80 90 100
>>CCDS3563.1 PPBP gene_id:5473|Hs108|chr4 (128 aa)
initn: 199 init1: 150 opt: 221 Z-score: 309.7 bits: 62.5 E(32554): 6.3e-11
Smith-Waterman score: 221; 47.8% identity (75.4% similar) in 69 aa overlap (31-99:60-127)
10 20 30 40 50 60
pF1KE1 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPH
::::.:::: : .::: :. :.:: .: :
CCDS35 LTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSG-IHPKNIQSLEVIGKGTH
30 40 50 60 70 80
70 80 90
pF1KE1 CANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS
: ..:.:. :.:::..:::: ....:.: : :..
CCDS35 CNQVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDESAD
90 100 110 120
>>CCDS34006.1 CXCL5 gene_id:6374|Hs108|chr4 (114 aa)
initn: 236 init1: 174 opt: 220 Z-score: 309.0 bits: 62.2 E(32554): 6.8e-11
Smith-Waterman score: 220; 34.0% identity (77.7% similar) in 94 aa overlap (2-93:15-107)
10 20 30 40
pF1KE1 MTSKLAVALLAAFLISAALCEGAVLPRSA--KELRCQCIKTYSKPFH
.:.: . :. .:.. ... : .: .:::: :..: .. :
CCDS34 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQT-TQGVH
10 20 30 40 50
50 60 70 80 90
pF1KE1 PKFIKELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS
::.:..:.:. ::.:...:....:..:.:.::::. ....:..:.:
CCDS34 PKMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
60 70 80 90 100 110
99 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 01:31:25 2016 done: Mon Nov 7 01:31:25 2016
Total Scan time: 1.390 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]