Result of FASTA (ccds) for
pFN21AE1359
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1359, 410 aa
1>>>pF1KE1359 410 - 410 aa - 410 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3811+/-0.000713; mu= 17.0186+/- 0.043
mean_var=69.8468+/-13.700, 0's: 0 Z-trim(108.4): 36 B-trim: 9 in 1/53
Lambda= 0.153462
statistics sampled from 10146 (10182) to 10146 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.313), width: 16
Scan time: 2.990
The best scores are: opt bits E(32554)
CCDS12419.1 CCNE1 gene_id:898|Hs108|chr19 ( 410) 2788 626.2 1.7e-179
CCDS6264.1 CCNE2 gene_id:9134|Hs108|chr8 ( 404) 1231 281.5 1e-75
CCDS45031.1 CCNA1 gene_id:8900|Hs108|chr13 ( 421) 343 84.9 1.6e-16
CCDS45030.1 CCNA1 gene_id:8900|Hs108|chr13 ( 464) 343 84.9 1.7e-16
CCDS9357.1 CCNA1 gene_id:8900|Hs108|chr13 ( 465) 343 84.9 1.7e-16
CCDS3723.1 CCNA2 gene_id:890|Hs108|chr4 ( 432) 332 82.5 8.7e-16
CCDS8191.1 CCND1 gene_id:595|Hs108|chr11 ( 295) 306 76.6 3.4e-14
CCDS10170.1 CCNB2 gene_id:9133|Hs108|chr15 ( 398) 304 76.2 6e-14
CCDS3997.1 CCNB1 gene_id:891|Hs108|chr5 ( 433) 300 75.4 1.2e-13
CCDS4863.1 CCND3 gene_id:896|Hs108|chr6 ( 292) 285 71.9 8.6e-13
CCDS8524.1 CCND2 gene_id:894|Hs108|chr12 ( 289) 271 68.8 7.3e-12
CCDS14331.1 CCNB3 gene_id:85417|Hs108|chrX (1395) 276 70.3 1.2e-11
>>CCDS12419.1 CCNE1 gene_id:898|Hs108|chr19 (410 aa)
initn: 2788 init1: 2788 opt: 2788 Z-score: 3335.9 bits: 626.2 E(32554): 1.7e-179
Smith-Waterman score: 2788; 100.0% identity (100.0% similar) in 410 aa overlap (1-410:1-410)
10 20 30 40 50 60
pF1KE1 MPRERRERDAKERDTMKEDGGAEFSARSRKRKANVTVFLQDPDEEMAKIDRTARDQCGSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MPRERRERDAKERDTMKEDGGAEFSARSRKRKANVTVFLQDPDEEMAKIDRTARDQCGSQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PWDNNAVCADPCSLIPTPDKEDDDRVYPNSTCKPRIIAPSRGSPLPVLSWANREEVWKIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PWDNNAVCADPCSLIPTPDKEDDDRVYPNSTCKPRIIAPSRGSPLPVLSWANREEVWKIM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 ENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 LSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 ASALYHFSSSELMQKVSGYQWCDIENCVKWMVPFAMVIRETGSSKLKHFRGVADEDAHNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ASALYHFSSSELMQKVSGYQWCDIENCVKWMVPFAMVIRETGSSKLKHFRGVADEDAHNI
310 320 330 340 350 360
370 380 390 400 410
pF1KE1 QTHRDSLDLLDKARAKKAMLSEQNRASPLPSGLLTPPQSGKKQSSGPEMA
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QTHRDSLDLLDKARAKKAMLSEQNRASPLPSGLLTPPQSGKKQSSGPEMA
370 380 390 400 410
>>CCDS6264.1 CCNE2 gene_id:9134|Hs108|chr8 (404 aa)
initn: 1220 init1: 1198 opt: 1231 Z-score: 1473.0 bits: 281.5 E(32554): 1e-75
Smith-Waterman score: 1231; 51.6% identity (75.0% similar) in 380 aa overlap (27-402:29-399)
10 20 30 40 50
pF1KE1 MPRERRERDAKERDTMKEDGGAEFSARSRKRKANVTVFLQDPDEEMAKIDRTARDQCG
...:::.. : . ::..: . .:
CCDS62 MSRRSSRLQAKQQPQPSQTESPQEAQIIQAKKRKTTQDV--KKRREEVTKKHQYEIRNCW
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 SQPWDNNAVCADPCSLIPTPDKE---DDDRVYPNSTCKPRIIAPSRGSPLPVLSWANREE
: .... .:: .: :: :: .: . : : .: : :::: :::. .:
CCDS62 P-PVLSGGI--SPCIIIETPHKEIGTSDFSRFTNYRFKNLFINP---SPLPDLSWGCSKE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 VWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDR
:: ::.::. :..:.:: : :.:.::.::::::.:::::: :::::::::::::::
CCDS62 VWLNMLKKESRYVHDKHFEVLHSDLEPQMRSILLDWLLEVCEVYTLHRETFYLAQDFFDR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 YMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMK
.: ::... :..::::::.:::::.:::::: :::..:::::::::: ..:: :::.:.:
CCDS62 FMLTQKDINKNMLQLIGITSLFIASKLEEIYAPKLQEFAYVTDGACSEEDILRMELIILK
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE1 ALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFP
::::.: :.::.::::...:: :.: .:::::: :. :::::.:::::.: .: :::
CCDS62 ALKWELCPVTIISWLNLFLQVDALKDAPKVLLPQYSQETFIQIAQLLDLCILAIDSLEFQ
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE1 YGILAASALYHFSSSELMQKVSGYQWCDIENCVKWMVPFAMVIRETGSSKLKHFRGVADE
: ::.:.:: ::.: :...:.:: .: .: .:: :::::. :.. :. ::: :. . :
CCDS62 YRILTAAALCHFTSIEVVKKASGLEWDSISECVDWMVPFVNVVKSTSPVKLKTFKKIPME
300 310 320 330 340 350
360 370 380 390 400 410
pF1KE1 DAHNIQTHRDSLDLLDKARAKKAMLSEQNRASPL-PSGLLTPPQSGKKQSSGPEMA
: :::::: . : .:... .. . . .. ::. .:..:::.: .:
CCDS62 DRHNIQTHTNYLAMLEEVNYINT-FRKGGQLSPVCNGGIMTPPKSTEKPPGKH
360 370 380 390 400
>>CCDS45031.1 CCNA1 gene_id:8900|Hs108|chr13 (421 aa)
initn: 293 init1: 164 opt: 343 Z-score: 410.2 bits: 84.9 E(32554): 1.6e-16
Smith-Waterman score: 346; 31.4% identity (64.1% similar) in 223 aa overlap (114-328:169-379)
90 100 110 120 130 140
pF1KE1 DRVYPNSTCKPRIIAPSRGSPLPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPK
::... . . : . :.....: .
CCDS45 SPMLVDSSLLSQSEDISSLGTDVINVTEYAEEIYQYLREAEIRHRPKAHYMKKQPDITEG
140 150 160 170 180 190
150 160 170 180 190 200
pF1KE1 MRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLE
::.::.:::.:: : :::. ::.::: .:.::... . .:.. :::.: .....:.: :
CCDS45 MRTILVDWLVEVGEEYKLRAETLYLAVNFLDRFLSCM-SVLRGKLQLVGTAAMLLASKYE
200 210 220 230 240 250
210 220 230 240 250 260
pF1KE1 EIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLH
:::::.. .:.:.:: . . ..: :: ...:.: . :. : ..: :.. .
CCDS45 EIYPPEVDEFVYITDDTYTKRQLLKMEHLLLKVLAFDLTVPTTNQFLLQYLRRQGVCVRT
260 270 280 290 300 310
270 280 290 300 310
pF1KE1 EVLLPQYPQQIFIQIAELLDLCVLDVD-CLEFPYGILAASA--LYHFSSS-----ELMQK
: : .: .::: .:..: :.. ...::.: : ... . : .
CCDS45 ENL-AKY-------VAEL---SLLEADPFLKYLPSLIAAAAFCLANYTVNKHFWPETLAA
320 330 340 350 360
320 330 340 350 360 370
pF1KE1 VSGYQWCDIENCVKWMVPFAMVIRETGSSKLKHFRGVADEDAHNIQTHRDSLDLLDKARA
.::. .: :.
CCDS45 FTGYSLSEIVPCLSELHKAYLDIPHRPQQAIREKYKASKYLCVSLMEPPAVLLLQ
370 380 390 400 410 420
>>CCDS45030.1 CCNA1 gene_id:8900|Hs108|chr13 (464 aa)
initn: 293 init1: 164 opt: 343 Z-score: 409.6 bits: 84.9 E(32554): 1.7e-16
Smith-Waterman score: 346; 31.4% identity (64.1% similar) in 223 aa overlap (114-328:212-422)
90 100 110 120 130 140
pF1KE1 DRVYPNSTCKPRIIAPSRGSPLPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPK
::... . . : . :.....: .
CCDS45 SPMLVDSSLLSQSEDISSLGTDVINVTEYAEEIYQYLREAEIRHRPKAHYMKKQPDITEG
190 200 210 220 230 240
150 160 170 180 190 200
pF1KE1 MRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLE
::.::.:::.:: : :::. ::.::: .:.::... . .:.. :::.: .....:.: :
CCDS45 MRTILVDWLVEVGEEYKLRAETLYLAVNFLDRFLSCM-SVLRGKLQLVGTAAMLLASKYE
250 260 270 280 290 300
210 220 230 240 250 260
pF1KE1 EIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLH
:::::.. .:.:.:: . . ..: :: ...:.: . :. : ..: :.. .
CCDS45 EIYPPEVDEFVYITDDTYTKRQLLKMEHLLLKVLAFDLTVPTTNQFLLQYLRRQGVCVRT
310 320 330 340 350 360
270 280 290 300 310
pF1KE1 EVLLPQYPQQIFIQIAELLDLCVLDVD-CLEFPYGILAASA--LYHFSSS-----ELMQK
: : .: .::: .:..: :.. ...::.: : ... . : .
CCDS45 ENL-AKY-------VAEL---SLLEADPFLKYLPSLIAAAAFCLANYTVNKHFWPETLAA
370 380 390 400
320 330 340 350 360 370
pF1KE1 VSGYQWCDIENCVKWMVPFAMVIRETGSSKLKHFRGVADEDAHNIQTHRDSLDLLDKARA
.::. .: :.
CCDS45 FTGYSLSEIVPCLSELHKAYLDIPHRPQQAIREKYKASKYLCVSLMEPPAVLLLQ
410 420 430 440 450 460
>>CCDS9357.1 CCNA1 gene_id:8900|Hs108|chr13 (465 aa)
initn: 293 init1: 164 opt: 343 Z-score: 409.6 bits: 84.9 E(32554): 1.7e-16
Smith-Waterman score: 346; 31.4% identity (64.1% similar) in 223 aa overlap (114-328:213-423)
90 100 110 120 130 140
pF1KE1 DRVYPNSTCKPRIIAPSRGSPLPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPK
::... . . : . :.....: .
CCDS93 SPMLVDSSLLSQSEDISSLGTDVINVTEYAEEIYQYLREAEIRHRPKAHYMKKQPDITEG
190 200 210 220 230 240
150 160 170 180 190 200
pF1KE1 MRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLE
::.::.:::.:: : :::. ::.::: .:.::... . .:.. :::.: .....:.: :
CCDS93 MRTILVDWLVEVGEEYKLRAETLYLAVNFLDRFLSCM-SVLRGKLQLVGTAAMLLASKYE
250 260 270 280 290 300
210 220 230 240 250 260
pF1KE1 EIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLH
:::::.. .:.:.:: . . ..: :: ...:.: . :. : ..: :.. .
CCDS93 EIYPPEVDEFVYITDDTYTKRQLLKMEHLLLKVLAFDLTVPTTNQFLLQYLRRQGVCVRT
310 320 330 340 350 360
270 280 290 300 310
pF1KE1 EVLLPQYPQQIFIQIAELLDLCVLDVD-CLEFPYGILAASA--LYHFSSS-----ELMQK
: : .: .::: .:..: :.. ...::.: : ... . : .
CCDS93 ENL-AKY-------VAEL---SLLEADPFLKYLPSLIAAAAFCLANYTVNKHFWPETLAA
370 380 390 400 410
320 330 340 350 360 370
pF1KE1 VSGYQWCDIENCVKWMVPFAMVIRETGSSKLKHFRGVADEDAHNIQTHRDSLDLLDKARA
.::. .: :.
CCDS93 FTGYSLSEIVPCLSELHKAYLDIPHRPQQAIREKYKASKYLCVSLMEPPAVLLLQ
420 430 440 450 460
>>CCDS3723.1 CCNA2 gene_id:890|Hs108|chr4 (432 aa)
initn: 296 init1: 169 opt: 332 Z-score: 396.9 bits: 82.5 E(32554): 8.7e-16
Smith-Waterman score: 351; 32.4% identity (69.1% similar) in 207 aa overlap (126-321:184-372)
100 110 120 130 140
pF1KE1 IIAPSRGSPLPVLSWANREEVWKIMLNKEKTYLRDQH--------FLEQHPLLQPKMRAI
::::... .....: . .::::
CCDS37 SPHTMDMSIILEDEKPVSVNEVPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAI
160 170 180 190 200 210
150 160 170 180 190 200
pF1KE1 LLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYP
:.:::.:: : :::. ::..:: ...::..... .:.. :::.: .....:.:.:::::
CCDS37 LVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSM-SVLRGKLQLVGTAAMLLASKFEEIYP
220 230 240 250 260 270
210 220 230 240 250 260
pF1KE1 PKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLL
:.. .:.:.:: . . ..: :: ...:.: . :. :. ..:. :. ::
CCDS37 PEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYF-------LH----
280 290 300 310 320
270 280 290 300 310 320
pF1KE1 PQYPQQIFIQ-IAELL-DLCVLDVD-CLEFPYGILAASALYHFSSSELMQKVSGYQWCDI
: : . .. .: .: .: ..:.: :.. ...:..: .:.. . :.: .:
CCDS37 -QQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAA-FHLA----LYTVTGQSWPES
330 340 350 360 370
330 340 350 360 370 380
pF1KE1 ENCVKWMVPFAMVIRETGSSKLKHFRGVADEDAHNIQTHRDSLDLLDKARAKKAMLSEQN
CCDS37 LIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNPPETLNL
380 390 400 410 420 430
>>CCDS8191.1 CCND1 gene_id:595|Hs108|chr11 (295 aa)
initn: 286 init1: 149 opt: 306 Z-score: 368.2 bits: 76.6 E(32554): 3.4e-14
Smith-Waterman score: 306; 30.4% identity (66.0% similar) in 194 aa overlap (114-304:25-208)
90 100 110 120 130 140
pF1KE1 DRVYPNSTCKPRIIAPSRGSPLPVLSWANREEVWKIMLNKEKTYLRDQHFLE--QHPLLQ
..: . ::. :.: . ... :. .:
CCDS81 MEHQLLCCEVETIRRAYPDANLLNDRVLRAMLKAEETCAPSVSYFKCVQKEVL-
10 20 30 40 50
150 160 170 180 190 200
pF1KE1 PKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAK
:.:: :. :..:::: : ..:.: ::....::.. . : : :. :::.: . .:.:.:
CCDS81 PSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFL-SLEPVKKSRLQLLGATCMFVASK
60 70 80 90 100 110
210 220 230 240 250 260
pF1KE1 LEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLND
..: : ... ::.. .:.: :::.... ::: :. .: .... .:.
CCDS81 MKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIE-----HFLSK
120 130 140 150 160
270 280 290 300 310 320
pF1KE1 LHEVLLPQYPQQIFIQIAE-LLDLCVLDVDCLEFPYGILAASALYHFSSSELMQKVSGYQ
. :. . .::. . :. .. ::. :: . : ...::...
CCDS81 MPEA---EENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFL
170 180 190 200 210 220
330 340 350 360 370 380
pF1KE1 WCDIENCVKWMVPFAMVIRETGSSKLKHFRGVADEDAHNIQTHRDSLDLLDKARAKKAML
CCDS81 SYYRLTRFLSRVIKCDPDCLRACQEQIEALLESSLRQAQQNMDPKAAEEEEEEEEEVDLA
230 240 250 260 270 280
>>CCDS10170.1 CCNB2 gene_id:9133|Hs108|chr15 (398 aa)
initn: 275 init1: 170 opt: 304 Z-score: 363.9 bits: 76.2 E(32554): 6e-14
Smith-Waterman score: 322; 27.2% identity (60.0% similar) in 320 aa overlap (13-321:31-325)
10 20 30
pF1KE1 MPRERRERDAKERDTMKEDGGAEFSARSR---KRKANVTVFL
: :. :. : . ..:. :. :. : .
CCDS10 MALLRRPTVSSDLENIDTGVNSKVKSHVTIRRTVLEEIGNRVTTRAAQVAKKAQNTKVPV
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE1 QDPDEEMAKIDRTARDQCGSQPWDNNAVCADPCSLIPTPD----KEDDD-RVYPNST-CK
: : . ..... . . .: . . . : . :::. ::.. ... .. ::
CCDS10 Q-PTKT-TNVNKQLKPTASVKPVQMEKLA--PKGPSPTPEDVSMKEENLCQAFSDALLCK
70 80 90 100 110
100 110 120 130 140 150
pF1KE1 PRIIAPSRGSPLPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLM
. : .. : : ..... . . : . :::. . . . .:::::.:::.
CCDS10 IEDI-DNEDWENPQLCSDYVKDIYQYLRQLEVLQSINPHFLDGRDI-NGRMRAILVDWLV
120 130 140 150 160 170
160 170 180 190 200 210
pF1KE1 EVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQF
.: ..: .::.:. ..::.. .: : . :::.::..:..:.: ::.. :....:
CCDS10 QVHSKFRLLQETLYMCVGIMDRFLQVQP-VSRKKLQLVGITALLLASKYEEMFSPNIEDF
180 190 200 210 220 230
220 230 240 250 260 270
pF1KE1 AYVTDGACSGDEILTMELMIMKALKWRLS-PLTIVSWLNVYMQVAYLNDLHEVLLPQYPQ
.:.::.: ....: :: .:.: ::..:. :: . .: ... . :... : .:
CCDS10 VYITDNAYTSSQIREMETLILKELKFELGRPLPL-HFLRRASKAGEV-DVEQHTLAKY--
240 250 260 270 280
280 290 300 310 320 330
pF1KE1 QIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSSSELMQKVSGY-QWCDIENCVKWM
:..: ..: : ... . .::.: : : ::: : .:
CCDS10 --------LMELTLIDYDMVHYHPSKVAAAA------SCLSQKVLGQGKWNLKQQYYTGY
290 300 310 320 330
340 350 360 370 380 390
pF1KE1 VPFAMVIRETGSSKLKHFRGVADEDAHNIQTHRDSLDLLDKARAKKAMLSEQNRASPLPS
CCDS10 TENEVLEVMQHMAKNVVKVNENLTKFIAIKNKYASSKLLKISMIPQLNSKAVKDLASPLI
340 350 360 370 380 390
>>CCDS3997.1 CCNB1 gene_id:891|Hs108|chr5 (433 aa)
initn: 323 init1: 188 opt: 300 Z-score: 358.6 bits: 75.4 E(32554): 1.2e-13
Smith-Waterman score: 332; 34.8% identity (70.1% similar) in 184 aa overlap (123-304:182-349)
100 110 120 130 140 150
pF1KE1 KPRIIAPSRGSPLPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWL
.:. .: ...: .. . .:::::.:::
CCDS39 AVNDVDAEDGADPNLCSEYVKDIYAYLRQLEEEQAVRPKYLLGRE--VTGNMRAILIDWL
160 170 180 190 200
160 170 180 190 200 210
pF1KE1 MEVCEVYKLHRETFYLAQDFFDRYMATQENVV-KTLLQLIGISSLFIAAKLEEIYPPKLH
..: ..: .::.:.. ...::.: :.: : : .:::.:....:::.: ::.:::..
CCDS39 VQVQMKFRLLQETMYMTVSIIDRFM--QNNCVPKKMLQLVGVTAMFIASKYEEMYPPEIG
210 220 230 240 250 260
220 230 240 250 260 270
pF1KE1 QFAYVTDGACSGDEILTMELMIMKALKWRLS-PLTIVSWLNVYMQVAYLNDLHEVLLPQY
.::.:::.. . .: ::. :..::.. :. :: . .: ... . :... : .:
CCDS39 DFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPL-HFLRRASKIGEV-DVEQHTLAKY
270 280 290 300 310 320
280 290 300 310 320 330
pF1KE1 PQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSSSELMQKVSGYQWCDIENCVKW
:..: .:: : ..:: . .::.:.
CCDS39 ----------LMELTMLDYDMVHFPPSQIAAGAFCLALKILDNGEWTPTLQHYLSYTEES
330 340 350 360 370
340 350 360 370 380 390
pF1KE1 MVPFAMVIRETGSSKLKHFRGVADEDAHNIQTHRDSLDLLDKARAKKAMLSEQNRASPLP
CCDS39 LLPVMQHLAKNVVMVNQGLTKHMTVKNKYATSKHAKISTLPQLNSALVQDLAKAVAKV
380 390 400 410 420 430
>>CCDS4863.1 CCND3 gene_id:896|Hs108|chr6 (292 aa)
initn: 219 init1: 118 opt: 285 Z-score: 343.2 bits: 71.9 E(32554): 8.6e-13
Smith-Waterman score: 297; 29.3% identity (60.5% similar) in 215 aa overlap (92-304:6-208)
70 80 90 100 110 120
pF1KE1 WDNNAVCADPCSLIPTPDKEDDDRVYPNSTCKPRIIAPSRGSPLPVLSWANREEVWKIML
:. :: :..: : : .: : . .:
CCDS48 MELLCCEGTRHAP-RAGPDPRLLGDQR--VLQSLL
10 20 30
130 140 150 160 170 180
pF1KE1 NKEKTYL-RDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQ
:. :. : ..: . ..:.:: .: :..:::: . ..:.: ::....:::..
CCDS48 RLEERYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCV
40 50 60 70 80 90
190 200 210 220 230 240
pF1KE1 ENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWR
. :. :::.: ...:.::.: : .... :: : : .. :.... :::
CCDS48 PTR-KAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWD
100 110 120 130 140 150
250 260 270 280 290
pF1KE1 LSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAE-LLDLCVLDVDCLEFPYGIL
:. . ..: :.. ::.. ::. : . . :. .: ::. : .: ...
CCDS48 LAAVIAHDFL------AFI--LHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMI
160 170 180 190 200
300 310 320 330 340 350
pF1KE1 AASALYHFSSSELMQKVSGYQWCDIENCVKWMVPFAMVIRETGSSKLKHFRGVADEDAHN
:....
CCDS48 ATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLREASQTSS
210 220 230 240 250 260
410 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 23:51:55 2016 done: Sun Nov 6 23:51:55 2016
Total Scan time: 2.990 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]