FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1356, 91 aa
  1>>>pF1KE1356 91 - 91 aa - 91 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5656+/-0.00026; mu= 13.3385+/- 0.016
 mean_var=61.9356+/-12.265, 0's: 0 Z-trim(119.8): 7  B-trim: 0 in 0/53
 Lambda= 0.162969
 statistics sampled from 34225 (34232) to 34225 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.401), width:  16
 Scan time:  4.380

The best scores are:                                      opt bits E(85289)
NP_003348 (OMIM: 192020) uteroglobin precursor [Ho (  91)  577 142.8   7e-35
NP_006543 (OMIM: 615060) secretoglobin family 1D m (  90)  160 44.8 2.3e-05
NP_006542 (OMIM: 615061) secretoglobin family 1D m (  90)  152 42.9 8.4e-05
NP_996881 (OMIM: 615062) secretoglobin family 1D m (  83)  141 40.3 0.00047


>>NP_003348 (OMIM: 192020) uteroglobin precursor [Homo s  (91 aa)
 initn: 577 init1: 577 opt: 577  Z-score: 747.2  bits: 142.8 E(85289): 7e-35
Smith-Waterman score: 577; 100.0% identity (100.0% similar) in 91 aa overlap (1-91:1-91)

               10        20        30        40        50        60
pF1KE1 MKLAVTLTLVTLALCCSSASAEICPSFQRVIETLLMDTPSSYEAAMELFSPDQDMREAGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MKLAVTLTLVTLALCCSSASAEICPSFQRVIETLLMDTPSSYEAAMELFSPDQDMREAGA
               10        20        30        40        50        60

               70        80        90 
pF1KE1 QLKKLVDTLPQKPRESIIKLMEKIAQSSLCN
       :::::::::::::::::::::::::::::::
NP_003 QLKKLVDTLPQKPRESIIKLMEKIAQSSLCN
               70        80        90 

>>NP_006543 (OMIM: 615060) secretoglobin family 1D membe  (90 aa)
 initn: 143 init1: 129 opt: 160  Z-score: 217.4  bits: 44.8 E(85289): 2.3e-05
Smith-Waterman score: 160; 33.0% identity (57.1% similar) in 91 aa overlap (1-91:1-89)

               10        20        30        40        50        60
pF1KE1 MKLAVTLTLVTLALCCSSASAEICPSFQRVIETLLMDTPSSYEAAMELFSPDQDMREAGA
       :.:.: : :.::::::  :.: .: ..   :  .:.     ..  .  :.   .   :  
NP_006 MRLSVCLLLLTLALCCYRANAVVCQALGSEITGFLLAGKPVFKFQLAKFKAPLEAVAAKM
               10        20        30        40        50        60

               70        80        90  
pF1KE1 QLKKLVDTLPQKPRESIIKLMEKIAQSSLCN 
       ..:: :::.  . :  : : . :::..  :. 
NP_006 EVKKCVDTMAYEKRVLITKTLGKIAEK--CDR
               70        80          90

>>NP_006542 (OMIM: 615061) secretoglobin family 1D membe  (90 aa)
 initn: 149 init1: 149 opt: 152  Z-score: 207.2  bits: 42.9 E(85289): 8.4e-05
Smith-Waterman score: 152; 31.8% identity (65.9% similar) in 85 aa overlap (1-84:1-84)

               10        20         30        40        50         
pF1KE1 MKLAVTLTLVTLALCCSSASAEICPSF-QRVIETLLMDTPSSYEAAMELFSPDQDMREAG
       :::.: : :::::::: .:.::.::.. ..... .... :  .. ..  :.   .   : 
NP_006 MKLSVCLLLVTLALCCYQANAEFCPALVSELLDFFFISEPL-FKLSLAKFDAPPEAVAAK
               10        20        30        40         50         

      60        70        80        90 
pF1KE1 AQLKKLVDTLPQKPRESIIKLMEKIAQSSLCN
         .:. .: .  . :  : ... ::       
NP_006 LGVKRCTDQMSLQKRSLIAEVLVKILKKCSV 
      60        70        80        90 

>>NP_996881 (OMIM: 615062) secretoglobin family 1D membe  (83 aa)
 initn:  73 init1:  73 opt: 141  Z-score: 193.7  bits: 40.3 E(85289): 0.00047
Smith-Waterman score: 141; 30.4% identity (60.8% similar) in 79 aa overlap (1-79:1-79)

               10        20        30        40        50        60
pF1KE1 MKLAVTLTLVTLALCCSSASAEICPSFQRVIETLLMDTPSSYEAAMELFSPDQDMREAGA
       :.:.: : .:.::::: .: : .::.    : ..:. . .. .  .  ..:  .   :  
NP_996 MRLSVCLLMVSLALCCYQAHALVCPAVASEITVFLFLSDAAVNLQVAKLNPPPEALAAKL
               10        20        30        40        50        60

               70        80        90 
pF1KE1 QLKKLVDTLPQKPRESIIKLMEKIAQSSLCN
       ..:. .: .  : : :. :            
NP_996 EVKHCTDQISFKKRLSLKKSWWK        
               70        80           




91 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 23:18:11 2016 done: Sun Nov  6 23:18:12 2016
 Total Scan time:  4.380 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]