FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1344, 560 aa
  1>>>pF1KE1344 560 - 560 aa - 560 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6145+/-0.000916; mu= 13.1252+/- 0.056
 mean_var=94.4997+/-18.495, 0's: 0 Z-trim(108.3): 19  B-trim: 39 in 1/50
 Lambda= 0.131935
 statistics sampled from 10091 (10099) to 10091 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.675), E-opt: 0.2 (0.31), width:  16
 Scan time:  3.030

The best scores are:                                      opt bits E(32554)
CCDS11365.1 CDC6 gene_id:990|Hs108|chr17           ( 560) 3658 706.6  2e-203
CCDS566.1 ORC1 gene_id:4998|Hs108|chr1             ( 861)  516 108.6 3.2e-23


>>CCDS11365.1 CDC6 gene_id:990|Hs108|chr17                (560 aa)
 initn: 3658 init1: 3658 opt: 3658  Z-score: 3765.5  bits: 706.6 E(32554): 2e-203
Smith-Waterman score: 3658; 99.8% identity (100.0% similar) in 560 aa overlap (1-560:1-560)

               10        20        30        40        50        60
pF1KE1 MPQTRSQAQATISFPKRKLSRALNKAKNSSDAKLEPTNVQTVTCSPRVKALPLSPRKRLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MPQTRSQAQATISFPKRKLSRALNKAKNSSDAKLEPTNVQTVTCSPRVKALPLSPRKRLG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DDNLCNTPHLPPCSPPKQGKKENGPPHSHTLKGRRLVFDNQLTIKSPSKRELAKVHQNKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DDNLCNTPHLPPCSPPKQGKKENGPPHSHTLKGRRLVFDNQLTIKSPSKRELAKVHQNKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LSSVRKSQEITTNSEQRCPLKKESACVRLFKQEGTCYQQAKLVLNTAVPDRLPAREREMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LSSVRKSQEITTNSEQRCPLKKESACVRLFKQEGTCYQQAKLVLNTAVPDRLPAREREMD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VIRNFLREHICGKKAGSLYLSGAPGTGKTACLSRILQDLKKELKGFKTIMLNCMSLRTAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VIRNFLREHICGKKAGSLYLSGAPGTGKTACLSRILQDLKKELKGFKTIMLNCMSLRTAQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 AVFPAIAQEICQEEVSRPAGKDMMRKLEKHMTAEKGPMIVLVLDEMDQLDSKGQDVLYTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AVFPAIAQEICQEEVSRPAGKDMMRKLEKHMTAEKGPMIVLVLDEMDQLDSKGQDVLYTL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 FEWPWLSNSHLVLIGIANTLDLTDRILPRLQAREKCKPQLLNFPPYTRNQIVTILQDRLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FEWPWLSNSHLVLIGIANTLDLTDRILPRLQAREKCKPQLLNFPPYTRNQIVTILQDRLN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 QVSRDQVLDNAAVQFCARKVSAVSGDVRKALDVCRRAIEIVESDVKSQTILKPLSECKSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QVSRDQVLDNAAVQFCARKVSAVSGDVRKALDVCRRAIEIVESDVKSQTILKPLSECKSP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 SEPLIPKRVGLIHISQVISEIDGNRMTLSQEGAQDSFPLQQKILVCSLMLLIRQLKIKEV
       ::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::
CCDS11 SEPLIPKRVGLIHISQVISEVDGNRMTLSQEGAQDSFPLQQKILVCSLMLLIRQLKIKEV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 TLGKLYEAYSKVCRKQQVAAVDQSECLSLSGLLEARGILGLKRNKETRLTKVFFKIEEKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TLGKLYEAYSKVCRKQQVAAVDQSECLSLSGLLEARGILGLKRNKETRLTKVFFKIEEKE
              490       500       510       520       530       540

              550       560
pF1KE1 IEHALKDKALIGNILATGLP
       ::::::::::::::::::::
CCDS11 IEHALKDKALIGNILATGLP
              550       560

>>CCDS566.1 ORC1 gene_id:4998|Hs108|chr1                  (861 aa)
 initn: 353 init1: 167 opt: 516  Z-score: 530.4  bits: 108.6 E(32554): 3.2e-23
Smith-Waterman score: 603; 28.1% identity (62.3% similar) in 467 aa overlap (99-548:422-861)

       70        80        90       100       110       120        
pF1KE1 HLPPCSPPKQGKKENGPPHSHTLKGRRLVFDNQLTIKSPSKRELAKVHQNKILSSVRKSQ
                                     :.. .   :  :.  .. . .. ::...: 
CCDS56 RQQLRFLGNSKSDQEEKEILPAAEISDSSSDEEEASTPPLPRRAPRTVSRNLRSSLKSSL
             400       410       420       430       440       450 

      130       140              150        160        170         
pF1KE1 EITTNSEQRCPLKKESAC----VR---LFKQE-GTCYQQAKLVLN-TAVPDRLPAREREM
       .  :.  ..    .   :    .:   :  :: ..  ..:.: :. .:::. :: ::.:.
CCDS56 HTLTKVPKKSLKPRTPRCAAPQIRSRSLAAQEPASVLEEARLRLHVSAVPESLPCREQEF
             460       470       480       490       500       510 

     180       190       200       210       220            230    
pF1KE1 DVIRNFLREHICGKKAGSLYLSGAPGTGKTACLSRILQDLKK-----ELKGFKTIMLNCM
       . : ::.. ..  . .: .:.::.::::::: . .... :..     ..  :. : .: :
CCDS56 QDIYNFVESKLLDHTGGCMYISGVPGTGKTATVHEVIRCLQQAAQANDVPPFQYIEVNGM
             520       530       540       550       560       570 

          240       250       260       270         280       290  
pF1KE1 SLRTAQAVFPAIAQEICQEEVSRPAGKDMMRKLEKHMTAEKGPM--IVLVLDEMDQLDSK
       .:   . :.  : :..  ....   . ..   : :.. .. .:.   ::..::.: : ..
CCDS56 KLTEPHQVYVQILQKLTGQKATANHAAEL---LAKQFCTRGSPQETTVLLVDELDLLWTH
             580       590       600          610       620        

            300       310       320        330       340       350 
pF1KE1 GQDVLYTLFEWPWLSNSHLVLIGIANTLDLTDRIL-PRLQAREKCKPQLLNFPPYTRNQI
        ::..:.::.::  ....::...::::.:: .::.  :...:       . : ::: .:.
CCDS56 KQDIMYNLFDWPTHKEARLVVLAIANTMDLPERIMMNRVSSRLGLTR--MCFQPYTYSQL
      630       640       650       660       670         680      

             360       370       380       390       400       410 
pF1KE1 VTILQDRLNQVSRDQVLDNAAVQFCARKVSAVSGDVRKALDVCRRAIEIVESDVKSQTIL
         ::..::...   ..... :.:. ::::.:.:::.:. ::.:::: :: :    ::   
CCDS56 QQILRSRLKHL---KAFEDDAIQLVARKVAALSGDARRCLDICRRATEICEF---SQ---
        690          700       710       720       730             

             420       430       440       450       460       470 
pF1KE1 KPLSECKSPSEPLIPKRVGLIHISQVISEIDGNRMTLSQEGAQDSFPLQQKILVCSLMLL
             ..:. :      ::. :.. .  .:    .    . ..:  :.:..:  ...  
CCDS56 ------QKPDSP------GLVTIAHSMEAVDEMFSSSYITAIKNSSVLEQSFLR-AILAE
             740             750       760       770        780    

             480       490       500       510       520       530 
pF1KE1 IRQLKIKEVTLGKLYEAYSKVCRKQQVAAVDQSECLSLSGLLEARGILGLKRNKETRLTK
       .:.  ..:.:. ..:  .  .:: . .    .:: ... . : .  .: .. ...  : .
CCDS56 FRRSGLEEATFQQIYSQHVALCRMEGLPYPTMSETMAVCSHLGSCRLLLVEPSRNDLLLR
          790       800       810       820       830       840    

             540       550       560
pF1KE1 VFFKIEEKEIEHALKDKALIGNILATGLP
       : ... . .. .::::.            
CCDS56 VRLNVSQDDVLYALKDE            
          850       860             




560 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:39:49 2016 done: Sun Nov  6 22:39:49 2016
 Total Scan time:  3.030 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]