FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1336, 250 aa
  1>>>pF1KE1336 250 - 250 aa - 250 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5457+/-0.000317; mu= 13.2412+/- 0.020
 mean_var=65.6880+/-13.038, 0's: 0 Z-trim(117.0): 9  B-trim: 0 in 0/50
 Lambda= 0.158245
 statistics sampled from 28569 (28571) to 28569 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.335), width:  16
 Scan time:  7.120

The best scores are:                                      opt bits E(85289)
NP_006323 (OMIM: 604664) gamma-interferon-inducibl ( 250) 1719 400.8 1.2e-111


>>NP_006323 (OMIM: 604664) gamma-interferon-inducible ly  (250 aa)
 initn: 1719 init1: 1719 opt: 1719  Z-score: 2125.4  bits: 400.8 E(85289): 1.2e-111
Smith-Waterman score: 1719; 100.0% identity (100.0% similar) in 250 aa overlap (1-250:1-250)

               10        20        30        40        50        60
pF1KE1 MTLSPLLLFLPPLLLLLDVPTAAVQASPLQALDFFGNGPPVNYKTGNLYLRGPLKKSNAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MTLSPLLLFLPPLLLLLDVPTAAVQASPLQALDFFGNGPPVNYKTGNLYLRGPLKKSNAP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LVNVTLYYEALCGGCRAFLIRELFPTWLLVMEILNVTLVPYGNAQEQNVSGRWEFKCQHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LVNVTLYYEALCGGCRAFLIRELFPTWLLVMEILNVTLVPYGNAQEQNVSGRWEFKCQHG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 EEECKFNKVEACVLDELDMELAFLTIVCMEEFEDMERSLPLCLQLYAPGLSPDTIMECAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EEECKFNKVEACVLDELDMELAFLTIVCMEEFEDMERSLPLCLQLYAPGLSPDTIMECAM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 GDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPLEDQTQLLTLVCQLYQGKKPDVCPSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPLEDQTQLLTLVCQLYQGKKPDVCPSS
              190       200       210       220       230       240

              250
pF1KE1 TSSLRSVCFK
       ::::::::::
NP_006 TSSLRSVCFK
              250




250 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:41:47 2016 done: Mon Nov  7 00:41:48 2016
 Total Scan time:  7.120 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]