FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1335, 232 aa
  1>>>pF1KE1335 232 - 232 aa - 232 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6110+/-0.000626; mu= 14.0676+/- 0.038
 mean_var=81.7974+/-16.610, 0's: 0 Z-trim(113.3): 9  B-trim: 321 in 1/51
 Lambda= 0.141809
 statistics sampled from 13903 (13910) to 13903 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.427), width:  16
 Scan time:  2.470

The best scores are:                                      opt bits E(32554)
CCDS47308.1 CD74 gene_id:972|Hs108|chr5            ( 232) 1587 333.3   8e-92
CCDS47309.1 CD74 gene_id:972|Hs108|chr5            ( 296) 1429 301.1 5.2e-82
CCDS34276.1 CD74 gene_id:972|Hs108|chr5            ( 160)  987 210.5 5.3e-55


>>CCDS47308.1 CD74 gene_id:972|Hs108|chr5                 (232 aa)
 initn: 1587 init1: 1587 opt: 1587  Z-score: 1762.0  bits: 333.3 E(32554): 8e-92
Smith-Waterman score: 1587; 100.0% identity (100.0% similar) in 232 aa overlap (1-232:1-232)

               10        20        30        40        50        60
pF1KE1 MHRRRSRSCREDQKPVMDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MHRRRSRSCREDQKPVMDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LAGQATTAYFLYQQQGRLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LAGQATTAYFLYQQQGRLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GALPQGPMQNATKYGNMTEDHVMHLLQNADPLKVYPPLKGSFPENLRHLKNTMETIDWKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GALPQGPMQNATKYGNMTEDHVMHLLQNADPLKVYPPLKGSFPENLRHLKNTMETIDWKV
              130       140       150       160       170       180

              190       200       210       220       230  
pF1KE1 FESWMHHWLLFEMSRHSLEQKPTDAPPKESLELEDPSSGLGVTKQDLGPVPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FESWMHHWLLFEMSRHSLEQKPTDAPPKESLELEDPSSGLGVTKQDLGPVPM
              190       200       210       220       230  

>>CCDS47309.1 CD74 gene_id:972|Hs108|chr5                 (296 aa)
 initn: 1573 init1: 1429 opt: 1429  Z-score: 1585.8  bits: 301.1 E(32554): 5.2e-82
Smith-Waterman score: 1429; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:1-208)

               10        20        30        40        50        60
pF1KE1 MHRRRSRSCREDQKPVMDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MHRRRSRSCREDQKPVMDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LAGQATTAYFLYQQQGRLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LAGQATTAYFLYQQQGRLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GALPQGPMQNATKYGNMTEDHVMHLLQNADPLKVYPPLKGSFPENLRHLKNTMETIDWKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GALPQGPMQNATKYGNMTEDHVMHLLQNADPLKVYPPLKGSFPENLRHLKNTMETIDWKV
              130       140       150       160       170       180

              190       200       210       220       230          
pF1KE1 FESWMHHWLLFEMSRHSLEQKPTDAPPKESLELEDPSSGLGVTKQDLGPVPM        
       ::::::::::::::::::::::::::::                                
CCDS47 FESWMHHWLLFEMSRHSLEQKPTDAPPKVLTKCQEEVSHIPAVHPGSFRPKCDENGNYLP
              190       200       210       220       230       240

>>CCDS34276.1 CD74 gene_id:972|Hs108|chr5                 (160 aa)
 initn: 1001 init1: 987 opt: 987  Z-score: 1100.9  bits: 210.5 E(32554): 5.3e-55
Smith-Waterman score: 987; 99.3% identity (100.0% similar) in 148 aa overlap (1-148:1-148)

               10        20        30        40        50        60
pF1KE1 MHRRRSRSCREDQKPVMDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MHRRRSRSCREDQKPVMDDQRDLISNNEQLPMLGRRPGAPESKCSRGALYTGFSILVTLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LAGQATTAYFLYQQQGRLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LAGQATTAYFLYQQQGRLDKLTVTSQNLQLENLRMKLPKPPKPVSKMRMATPLLMQALPM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GALPQGPMQNATKYGNMTEDHVMHLLQNADPLKVYPPLKGSFPENLRHLKNTMETIDWKV
       :::::::::::::::::::::::::::.                                
CCDS34 GALPQGPMQNATKYGNMTEDHVMHLLQSHWNWRTRLLGWV                    
              130       140       150       160                    




232 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:54:53 2016 done: Mon Nov  7 00:54:54 2016
 Total Scan time:  2.470 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]