FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1332, 223 aa
  1>>>pF1KE1332 223 - 223 aa - 223 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3465+/-0.000803; mu= 13.1828+/- 0.048
 mean_var=62.5090+/-12.240, 0's: 0 Z-trim(107.1): 14  B-trim: 0 in 0/49
 Lambda= 0.162219
 statistics sampled from 9385 (9393) to 9385 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.289), width:  16
 Scan time:  2.150

The best scores are:                                      opt bits E(32554)
CCDS3462.1 UCHL1 gene_id:7345|Hs108|chr4           ( 223) 1485 355.9 1.2e-98
CCDS9453.1 UCHL3 gene_id:7347|Hs108|chr13          ( 230)  856 208.7 2.5e-54
CCDS73586.1 UCHL3 gene_id:7347|Hs108|chr13         ( 194)  742 182.0 2.3e-46


>>CCDS3462.1 UCHL1 gene_id:7345|Hs108|chr4                (223 aa)
 initn: 1485 init1: 1485 opt: 1485  Z-score: 1884.7  bits: 355.9 E(32554): 1.2e-98
Smith-Waterman score: 1485; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:1-223)

               10        20        30        40        50        60
pF1KE1 MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 NFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 TEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMP
              130       140       150       160       170       180

              190       200       210       220   
pF1KE1 FPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA
       :::::::::::::::::::::::::::::::::::::::::::
CCDS34 FPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA
              190       200       210       220   

>>CCDS9453.1 UCHL3 gene_id:7347|Hs108|chr13               (230 aa)
 initn: 836 init1: 342 opt: 856  Z-score: 1088.9  bits: 208.7 E(32554): 2.5e-54
Smith-Waterman score: 856; 55.2% identity (83.4% similar) in 223 aa overlap (5-222:8-230)

                  10        20        30        40        50       
pF1KE1    MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTA
              :.: :::. :. :..::.  .:.:::: :.. : :. :: :.::.:::::.: 
CCDS94 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE
               10        20        30        40        50        60

        60        70          80        90       100       110     
pF1KE1 QHENFRKKQIEELK--GQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLK
       ..: :: .. :..:  ::.:. .::::::::.:.:::::::::.:::.::. ::.::.::
CCDS94 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK
               70        80        90       100       110       120

         120       130       140       150          160       170  
pF1KE1 QFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCR---VDDKVNFHFILFNNVDGHL
       .:: :. .::::.::. .:. .::...:.. :.::: .   .:.::..::: . .:::::
CCDS94 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHL
              130       140       150       160       170       180

            180       190       200       210       220   
pF1KE1 YELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA
       :::::: :::.::: .:..:::.:: .::..: ::.  :.::.:.::  : 
CCDS94 YELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA 
              190       200       210       220       230 

>>CCDS73586.1 UCHL3 gene_id:7347|Hs108|chr13              (194 aa)
 initn: 730 init1: 342 opt: 742  Z-score: 945.9  bits: 182.0 E(32554): 2.3e-46
Smith-Waterman score: 742; 55.7% identity (84.0% similar) in 194 aa overlap (34-222:1-194)

            10        20        30        40        50        60   
pF1KE1 KPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFR
                                     .. : :. :: :.::.:::::.: ..: ::
CCDS73                               MDPELLSMVPRPVCAVLLLFPITEKYEVFR
                                             10        20        30

            70          80        90       100       110       120 
pF1KE1 KKQIEELK--GQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSET
        .. :..:  ::.:. .::::::::.:.:::::::::.:::.::. ::.::.::.:: :.
CCDS73 TEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEES
               40        50        60        70        80        90

             130       140       150          160       170        
pF1KE1 EKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCR---VDDKVNFHFILFNNVDGHLYELDGR
        .::::.::. .:. .::...:.. :.::: .   .:.::..::: . .:::::::::::
CCDS73 VSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGR
              100       110       120       130       140       150

      180       190       200       210       220   
pF1KE1 MPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA
        :::.::: .:..:::.:: .::..: ::.  :.::.:.::  : 
CCDS73 KPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA 
              160       170       180       190     




223 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 03:07:25 2016 done: Mon Nov  7 03:07:26 2016
 Total Scan time:  2.150 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]