Result of FASTA (omim) for
pFN21AE1323
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1323, 95 aa
1>>>pF1KE1323 95 - 95 aa - 95 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7396+/-0.000312; mu= 10.7911+/- 0.019
mean_var=44.6842+/- 8.857, 0's: 0 Z-trim(116.3): 64 B-trim: 179 in 1/51
Lambda= 0.191866
statistics sampled from 27258 (27324) to 27258 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.32), width: 16
Scan time: 4.070
The best scores are: opt bits E(85289)
NP_001123518 (OMIM: 601960) C-C motif chemokine 20 ( 95) 644 184.9 1.7e-47
NP_004582 (OMIM: 601960) C-C motif chemokine 20 is ( 96) 632 181.6 1.7e-46
NP_002980 (OMIM: 602737) C-C motif chemokine 21 pr ( 134) 178 56.0 1.5e-08
XP_011516306 (OMIM: 602737) PREDICTED: C-C motif c ( 145) 178 56.0 1.7e-08
NP_006265 (OMIM: 602227) C-C motif chemokine 19 pr ( 98) 170 53.7 5.4e-08
NP_004581 (OMIM: 601394) C-C motif chemokine 16 pr ( 120) 160 51.0 4.4e-07
XP_005258077 (OMIM: 601394) PREDICTED: C-C motif c ( 120) 160 51.0 4.4e-07
XP_016867161 (OMIM: 604697) PREDICTED: C-C motif c ( 94) 155 49.6 9.2e-07
NP_006063 (OMIM: 604697) C-C motif chemokine 26 pr ( 94) 155 49.6 9.2e-07
XP_016867160 (OMIM: 604697) PREDICTED: C-C motif c ( 148) 155 49.6 1.4e-06
NP_005614 (OMIM: 602283) C-C motif chemokine 8 pre ( 99) 151 48.5 2.1e-06
NP_996890 (OMIM: 603782) C-C motif chemokine 4-lik ( 92) 150 48.2 2.4e-06
NP_002975 (OMIM: 182284) C-C motif chemokine 4 pre ( 92) 150 48.2 2.4e-06
NP_002979 (OMIM: 603757) C-C motif chemokine 18 pr ( 89) 149 47.9 2.8e-06
NP_002974 (OMIM: 182283,609423) C-C motif chemokin ( 92) 146 47.1 5.1e-06
NP_002976 (OMIM: 187011) C-C motif chemokine 5 iso ( 91) 140 45.4 1.6e-05
NP_002986 (OMIM: 600250) lymphotactin precursor [H ( 114) 138 44.9 2.9e-05
XP_011508167 (OMIM: 600250) PREDICTED: lymphotacti ( 114) 138 44.9 2.9e-05
NP_003166 (OMIM: 604828) cytokine SCM-1 beta precu ( 114) 138 44.9 2.9e-05
NP_066286 (OMIM: 601395,609423) C-C motif chemokin ( 93) 137 44.6 2.9e-05
NP_001001437 (OMIM: 609468) C-C motif chemokine 3- ( 93) 137 44.6 2.9e-05
NP_002973 (OMIM: 158105,182940,607948,609423) C-C ( 99) 137 44.6 3e-05
NP_006264 (OMIM: 158106) C-C motif chemokine 7 pre ( 99) 134 43.8 5.4e-05
XP_011514762 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 134 43.8 6.4e-05
NP_002982 (OMIM: 602495) C-C motif chemokine 24 pr ( 119) 134 43.8 6.4e-05
XP_011514761 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 134 43.8 6.4e-05
NP_002977 (OMIM: 600807,601156,609423) eotaxin pre ( 97) 133 43.5 6.4e-05
NP_665905 (OMIM: 602494) C-C motif chemokine 23 is ( 120) 131 42.9 0.00011
NP_005055 (OMIM: 602494) C-C motif chemokine 23 is ( 137) 131 43.0 0.00013
NP_000575 (OMIM: 146930) interleukin-8 precursor [ ( 99) 126 41.5 0.00025
NP_005399 (OMIM: 601391) C-C motif chemokine 13 pr ( 98) 125 41.3 0.0003
NP_116739 (OMIM: 601392) C-C motif chemokine 14 is ( 93) 122 40.4 0.00051
NP_116738 (OMIM: 601392) C-C motif chemokine 14 is ( 109) 122 40.4 0.00059
XP_016882608 (OMIM: 602565) PREDICTED: C-C motif c ( 210) 113 38.0 0.006
NP_006410 (OMIM: 605149) C-X-C motif chemokine 13 ( 109) 108 36.6 0.0087
XP_006714126 (OMIM: 605149) PREDICTED: C-X-C motif ( 109) 108 36.6 0.0087
>>NP_001123518 (OMIM: 601960) C-C motif chemokine 20 iso (95 aa)
initn: 644 init1: 644 opt: 644 Z-score: 973.8 bits: 184.9 E(85289): 1.7e-47
Smith-Waterman score: 644; 100.0% identity (100.0% similar) in 95 aa overlap (1-95:1-95)
10 20 30 40 50 60
pF1KE1 MCCTKSLLLAALMSVLLLHLCGESEASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MCCTKSLLLAALMSVLLLHLCGESEASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDIN
10 20 30 40 50 60
70 80 90
pF1KE1 AIIFHTKKKLSVCANPKQTWVKYIVRLLSKKVKNM
:::::::::::::::::::::::::::::::::::
NP_001 AIIFHTKKKLSVCANPKQTWVKYIVRLLSKKVKNM
70 80 90
>>NP_004582 (OMIM: 601960) C-C motif chemokine 20 isofor (96 aa)
initn: 484 init1: 484 opt: 632 Z-score: 955.8 bits: 181.6 E(85289): 1.7e-46
Smith-Waterman score: 632; 99.0% identity (99.0% similar) in 96 aa overlap (1-95:1-96)
10 20 30 40 50
pF1KE1 MCCTKSLLLAALMSVLLLHLCGESEA-SNFDCCLGYTDRILHPKFIVGFTRQLANEGCDI
:::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
NP_004 MCCTKSLLLAALMSVLLLHLCGESEAASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDI
10 20 30 40 50 60
60 70 80 90
pF1KE1 NAIIFHTKKKLSVCANPKQTWVKYIVRLLSKKVKNM
::::::::::::::::::::::::::::::::::::
NP_004 NAIIFHTKKKLSVCANPKQTWVKYIVRLLSKKVKNM
70 80 90
>>NP_002980 (OMIM: 602737) C-C motif chemokine 21 precur (134 aa)
initn: 188 init1: 115 opt: 178 Z-score: 274.3 bits: 56.0 E(85289): 1.5e-08
Smith-Waterman score: 178; 33.3% identity (65.6% similar) in 90 aa overlap (5-90:3-92)
10 20 30 40 50
pF1KE1 MCCTKSLLLAALMSVLLLHL--CGESEASNFDCCLGYTDRILHPKFIVGFTRQLANEGCD
.:: :. :. :: . . :... :::: :..: . : . .. .: . ::.
NP_002 MAQSLALSLLILVLAFGIPRTQGSDGGAQDCCLKYSQRKIPAKVVRSYRKQEPSLGCS
10 20 30 40 50
60 70 80 90
pF1KE1 INAIIFHTKKKLS--VCANPKQTWVKYIVRLLSKKVKNM
: ::.: .:. . .::.::. ::. ... :.:
NP_002 IPAILFLPRKRSQAELCADPKELWVQQLMQHLDKTPSPQKPAQGCRKDRGASKTGKKGKG
60 70 80 90 100 110
NP_002 SKGCKRTERSQTPKGP
120 130
>>XP_011516306 (OMIM: 602737) PREDICTED: C-C motif chemo (145 aa)
initn: 188 init1: 115 opt: 178 Z-score: 273.7 bits: 56.0 E(85289): 1.7e-08
Smith-Waterman score: 178; 33.3% identity (65.6% similar) in 90 aa overlap (5-90:3-92)
10 20 30 40 50
pF1KE1 MCCTKSLLLAALMSVLLLHL--CGESEASNFDCCLGYTDRILHPKFIVGFTRQLANEGCD
.:: :. :. :: . . :... :::: :..: . : . .. .: . ::.
XP_011 MAQSLALSLLILVLAFGIPRTQGSDGGAQDCCLKYSQRKIPAKVVRSYRKQEPSLGCS
10 20 30 40 50
60 70 80 90
pF1KE1 INAIIFHTKKKLS--VCANPKQTWVKYIVRLLSKKVKNM
: ::.: .:. . .::.::. ::. ... :.:
XP_011 IPAILFLPRKRSQAELCADPKELWVQQLMQHLDKTPSPQKPAQGCRKDRGASKTGKKGKG
60 70 80 90 100 110
XP_011 SKGCKSQPLTPLFCPHRTERSQTPKGP
120 130 140
>>NP_006265 (OMIM: 602227) C-C motif chemokine 19 precur (98 aa)
initn: 182 init1: 159 opt: 170 Z-score: 264.5 bits: 53.7 E(85289): 5.4e-08
Smith-Waterman score: 170; 34.7% identity (60.0% similar) in 95 aa overlap (6-95:2-93)
10 20 30 40 50
pF1KE1 MCCTKSLLLAALMSVLLLH----LCGESEASNFDCCLGYTDRILHPKFIV-GFTRQLANE
.:::: . :: : : ..: ::::. :.. . : .:: .: : ..
NP_006 MALLLALSLLVLWTSPAPTLSGTNDAE--DCCLSVTQKPI-PGYIVRNFHYLLIKD
10 20 30 40 50
60 70 80 90
pF1KE1 GCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLSKKVKNM
:: . :..: : . ..:: : : ::. :.. :.. .:
NP_006 GCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQRTSAKMKRRSS
60 70 80 90
>>NP_004581 (OMIM: 601394) C-C motif chemokine 16 precur (120 aa)
initn: 167 init1: 89 opt: 160 Z-score: 248.1 bits: 51.0 E(85289): 4.4e-07
Smith-Waterman score: 160; 37.5% identity (69.6% similar) in 56 aa overlap (31-86:37-89)
10 20 30 40 50 60
pF1KE1 MCCTKSLLLAALMSVLLLHLCGESEASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDIN
::: : ...: ...::. . : .: .
NP_004 ALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGYRKAL---NCHLP
10 20 30 40 50 60
70 80 90
pF1KE1 AIIFHTKKKLSVCANPKQTWVKYIVRLLSKKVKNM
:::: ::.. ::.::.. ::. ..
NP_004 AIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLNSQ
70 80 90 100 110 120
>>XP_005258077 (OMIM: 601394) PREDICTED: C-C motif chemo (120 aa)
initn: 167 init1: 89 opt: 160 Z-score: 248.1 bits: 51.0 E(85289): 4.4e-07
Smith-Waterman score: 160; 37.5% identity (69.6% similar) in 56 aa overlap (31-86:37-89)
10 20 30 40 50 60
pF1KE1 MCCTKSLLLAALMSVLLLHLCGESEASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDIN
::: : ...: ...::. . : .: .
XP_005 ALSLLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGYRKAL---NCHLP
10 20 30 40 50 60
70 80 90
pF1KE1 AIIFHTKKKLSVCANPKQTWVKYIVRLLSKKVKNM
:::: ::.. ::.::.. ::. ..
XP_005 AIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLNSQ
70 80 90 100 110 120
>>XP_016867161 (OMIM: 604697) PREDICTED: C-C motif chemo (94 aa)
initn: 151 init1: 108 opt: 155 Z-score: 242.4 bits: 49.6 E(85289): 9.2e-07
Smith-Waterman score: 155; 30.6% identity (69.4% similar) in 85 aa overlap (6-88:9-88)
10 20 30 40 50
pF1KE1 MCCTKSLLLAALMSVLLLHLCGESEASNFD--CCLGYTDRILHPKFIVGFTRQLANE
..:::.:.: ::: ...:... ::. :. . : .. .. .....
XP_016 MMGLSLASAVLLASLLS---LHLGTATRGSDISKTCCFQYSHKPLPWTWVRSY--EFTSN
10 20 30 40 50
60 70 80 90
pF1KE1 GCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLSKKVKNM
.:. :.:: ::. .::..:.. ::. . ::
XP_016 SCSQRAVIFTTKRGKKVCTHPRKKWVQKYISLLKTPKQL
60 70 80 90
>>NP_006063 (OMIM: 604697) C-C motif chemokine 26 precur (94 aa)
initn: 151 init1: 108 opt: 155 Z-score: 242.4 bits: 49.6 E(85289): 9.2e-07
Smith-Waterman score: 155; 30.6% identity (69.4% similar) in 85 aa overlap (6-88:9-88)
10 20 30 40 50
pF1KE1 MCCTKSLLLAALMSVLLLHLCGESEASNFD--CCLGYTDRILHPKFIVGFTRQLANE
..:::.:.: ::: ...:... ::. :. . : .. .. .....
NP_006 MMGLSLASAVLLASLLS---LHLGTATRGSDISKTCCFQYSHKPLPWTWVRSY--EFTSN
10 20 30 40 50
60 70 80 90
pF1KE1 GCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLSKKVKNM
.:. :.:: ::. .::..:.. ::. . ::
NP_006 SCSQRAVIFTTKRGKKVCTHPRKKWVQKYISLLKTPKQL
60 70 80 90
>>XP_016867160 (OMIM: 604697) PREDICTED: C-C motif chemo (148 aa)
initn: 159 init1: 108 opt: 155 Z-score: 239.2 bits: 49.6 E(85289): 1.4e-06
Smith-Waterman score: 155; 30.6% identity (69.4% similar) in 85 aa overlap (6-88:63-142)
10 20 30
pF1KE1 MCCTKSLLLAALMSVLLLHLCGESEASNFD--CCL
..:::.:.: ::: ...:... ::.
XP_016 LIKGDQAGGVWEKPEKGLICSIMMGLSLASAVLLASLLS---LHLGTATRGSDISKTCCF
40 50 60 70 80
40 50 60 70 80 90
pF1KE1 GYTDRILHPKFIVGFTRQLANEGCDINAIIFHTKKKLSVCANPKQTWVKYIVRLLSKKVK
:. . : .. .. ......:. :.:: ::. .::..:.. ::. . ::
XP_016 QYSHKPLPWTWVRSY--EFTSNSCSQRAVIFTTKRGKKVCTHPRKKWVQKYISLLKTPKQ
90 100 110 120 130 140
pF1KE1 NM
XP_016 L
95 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 22:13:48 2016 done: Sun Nov 6 22:13:49 2016
Total Scan time: 4.070 Total Display time: -0.040
Function used was FASTA [36.3.4 Apr, 2011]