FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1319, 313 aa
  1>>>pF1KE1319 313 - 313 aa - 313 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7129+/-0.000645; mu= 14.2537+/- 0.039
 mean_var=70.5774+/-14.159, 0's: 0 Z-trim(111.2): 5  B-trim: 0 in 0/52
 Lambda= 0.152666
 statistics sampled from 12161 (12164) to 12161 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.374), width:  16
 Scan time:  2.300

The best scores are:                                      opt bits E(32554)
CCDS11821.1 TYMS gene_id:7298|Hs108|chr18          ( 313) 2172 486.8 8.9e-138


>>CCDS11821.1 TYMS gene_id:7298|Hs108|chr18               (313 aa)
 initn: 2172 init1: 2172 opt: 2172  Z-score: 2587.0  bits: 486.8 E(32554): 8.9e-138
Smith-Waterman score: 2172; 100.0% identity (100.0% similar) in 313 aa overlap (1-313:1-313)

               10        20        30        40        50        60
pF1KE1 MPVAGSELPRRPLPPAAQERDAEPRPPHGELQYLGQIQHILRCGVRKDDRTGTGTLSVFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MPVAGSELPRRPLPPAAQERDAEPRPPHGELQYLGQIQHILRCGVRKDDRTGTGTLSVFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 MQARYSLRDEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSKGVKIWDANGSRDFLDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MQARYSLRDEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSKGVKIWDANGSRDFLDS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 AWNPRDLPLMALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AWNPRDLPLMALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 TGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRKVEKIDDFKAEDFQIEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRKVEKIDDFKAEDFQIEG
              250       260       270       280       290       300

              310   
pF1KE1 YNPHPTIKMEMAV
       :::::::::::::
CCDS11 YNPHPTIKMEMAV
              310   




313 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 23:25:58 2016 done: Sun Nov  6 23:25:58 2016
 Total Scan time:  2.300 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]