FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1310, 397 aa
  1>>>pF1KE1310 397 - 397 aa - 397 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.6577+/-0.000431; mu= -18.3407+/- 0.027
 mean_var=346.8122+/-69.698, 0's: 0 Z-trim(121.7): 7  B-trim: 185 in 2/56
 Lambda= 0.068870
 statistics sampled from 38620 (38628) to 38620 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.453), width:  16
 Scan time:  9.240

The best scores are:                                      opt bits E(85289)
NP_002987 (OMIM: 601880) fractalkine isoform 1 pre ( 397) 2695 281.3 2.8e-75
NP_001291321 (OMIM: 601880) fractalkine isoform 2  ( 312) 2110 223.1 7.1e-58


>>NP_002987 (OMIM: 601880) fractalkine isoform 1 precurs  (397 aa)
 initn: 2695 init1: 2695 opt: 2695  Z-score: 1472.5  bits: 281.3 E(85289): 2.8e-75
Smith-Waterman score: 2695; 100.0% identity (100.0% similar) in 397 aa overlap (1-397:1-397)

               10        20        30        40        50        60
pF1KE1 MAPISLSWLLRLATFCHLTVLLAGQHHGVTKCNITCSKMTSKIPVALLIHYQQNQASCGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAPISLSWLLRLATFCHLTVLLAGQHHGVTKCNITCSKMTSKIPVALLIHYQQNQASCGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RAIILETRQHRLFCADPKEQWVKDAMQHLDRQAAALTRNGGTFEKQIGEVKPRTTPAAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RAIILETRQHRLFCADPKEQWVKDAMQHLDRQAAALTRNGGTFEKQIGEVKPRTTPAAGG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 MDESVVLEPEATGESSSLEPTPSSQEAQRALGTSPELPTGVTGSSGTRLPPTPKAQDGGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MDESVVLEPEATGESSSLEPTPSSQEAQRALGTSPELPTGVTGSSGTRLPPTPKAQDGGP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VGTELFRVPPVSTAATWQSSAPHQPGPSLWAEAKTSEAPSTQDPSTQASTASSPAPEENA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VGTELFRVPPVSTAATWQSSAPHQPGPSLWAEAKTSEAPSTQDPSTQASTASSPAPEENA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 PSEGQRVWGQGQSPRPENSLEREEMGPVPAHTDAFQDWGPGSMAHVSVVPVSSEGTPSRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PSEGQRVWGQGQSPRPENSLEREEMGPVPAHTDAFQDWGPGSMAHVSVVPVSSEGTPSRE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 PVASGSWTPKAEEPIHATMDPQRLGVLITPVPDAQAATRRQAVGLLAFLGLLFCLGVAMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PVASGSWTPKAEEPIHATMDPQRLGVLITPVPDAQAATRRQAVGLLAFLGLLFCLGVAMF
              310       320       330       340       350       360

              370       380       390       
pF1KE1 TYQSLQGCPRKMAGEMAEGLRYIPRSCGSNSYVLVPV
       :::::::::::::::::::::::::::::::::::::
NP_002 TYQSLQGCPRKMAGEMAEGLRYIPRSCGSNSYVLVPV
              370       380       390       

>>NP_001291321 (OMIM: 601880) fractalkine isoform 2 [Hom  (312 aa)
 initn: 2110 init1: 2110 opt: 2110  Z-score: 1160.0  bits: 223.1 E(85289): 7.1e-58
Smith-Waterman score: 2110; 100.0% identity (100.0% similar) in 312 aa overlap (86-397:1-312)

          60        70        80        90       100       110     
pF1KE1 ASCGKRAIILETRQHRLFCADPKEQWVKDAMQHLDRQAAALTRNGGTFEKQIGEVKPRTT
                                     ::::::::::::::::::::::::::::::
NP_001                               MQHLDRQAAALTRNGGTFEKQIGEVKPRTT
                                             10        20        30

         120       130       140       150       160       170     
pF1KE1 PAAGGMDESVVLEPEATGESSSLEPTPSSQEAQRALGTSPELPTGVTGSSGTRLPPTPKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PAAGGMDESVVLEPEATGESSSLEPTPSSQEAQRALGTSPELPTGVTGSSGTRLPPTPKA
               40        50        60        70        80        90

         180       190       200       210       220       230     
pF1KE1 QDGGPVGTELFRVPPVSTAATWQSSAPHQPGPSLWAEAKTSEAPSTQDPSTQASTASSPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QDGGPVGTELFRVPPVSTAATWQSSAPHQPGPSLWAEAKTSEAPSTQDPSTQASTASSPA
              100       110       120       130       140       150

         240       250       260       270       280       290     
pF1KE1 PEENAPSEGQRVWGQGQSPRPENSLEREEMGPVPAHTDAFQDWGPGSMAHVSVVPVSSEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEENAPSEGQRVWGQGQSPRPENSLEREEMGPVPAHTDAFQDWGPGSMAHVSVVPVSSEG
              160       170       180       190       200       210

         300       310       320       330       340       350     
pF1KE1 TPSREPVASGSWTPKAEEPIHATMDPQRLGVLITPVPDAQAATRRQAVGLLAFLGLLFCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TPSREPVASGSWTPKAEEPIHATMDPQRLGVLITPVPDAQAATRRQAVGLLAFLGLLFCL
              220       230       240       250       260       270

         360       370       380       390       
pF1KE1 GVAMFTYQSLQGCPRKMAGEMAEGLRYIPRSCGSNSYVLVPV
       ::::::::::::::::::::::::::::::::::::::::::
NP_001 GVAMFTYQSLQGCPRKMAGEMAEGLRYIPRSCGSNSYVLVPV
              280       290       300       310  




397 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:13:16 2016 done: Mon Nov  7 01:13:18 2016
 Total Scan time:  9.240 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]