FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1309, 357 aa
  1>>>pF1KE1309 357 - 357 aa - 357 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.2392+/-0.00128; mu= -11.1639+/- 0.078
 mean_var=483.7671+/-99.383, 0's: 0 Z-trim(113.9): 11  B-trim: 0 in 0/54
 Lambda= 0.058312
 statistics sampled from 14478 (14485) to 14478 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.445), width:  16
 Scan time:  2.600

The best scores are:                                      opt bits E(32554)
CCDS7785.1 EIF3F gene_id:8665|Hs108|chr11          ( 357) 2319 208.9 5.3e-54


>>CCDS7785.1 EIF3F gene_id:8665|Hs108|chr11               (357 aa)
 initn: 2319 init1: 2319 opt: 2319  Z-score: 1083.0  bits: 208.9 E(32554): 5.3e-54
Smith-Waterman score: 2319; 100.0% identity (100.0% similar) in 357 aa overlap (1-357:1-357)

               10        20        30        40        50        60
pF1KE1 MATPAVPVSAPPATPTPVPAAAPASVPAPTPAPAAAPVPAAAPASSSDPAAAAAATAAPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MATPAVPVSAPPATPTPVPAAAPASVPAPTPAPAAAPVPAAAPASSSDPAAAAAATAAPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 QTPASAQAPAQTPAPALPGPALPGPFPGGRVVRLHPVILASIVDSYERRNEGAARVIGTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 QTPASAQAPAQTPAPALPGPALPGPFPGGRVVRLHPVILASIVDSYERRNEGAARVIGTL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LGTVDKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LGTVDKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDIT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 EHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 EHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 YYDTERIGVDLIMKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 YYDTERIGVDLIMKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSA
              250       260       270       280       290       300

              310       320       330       340       350       
pF1KE1 DNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEKLVNL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 DNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEKLVNL
              310       320       330       340       350       




357 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 03:05:03 2016 done: Mon Nov  7 03:05:03 2016
 Total Scan time:  2.600 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]