Result of FASTA (omim) for
pFN21AE1307
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1307, 472 aa
1>>>pF1KE1307 472 - 472 aa - 472 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0880+/-0.000349; mu= 19.1396+/- 0.022
mean_var=69.8777+/-13.950, 0's: 0 Z-trim(115.4): 10 B-trim: 0 in 0/53
Lambda= 0.153428
statistics sampled from 25837 (25846) to 25837 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.303), width: 16
Scan time: 7.410
The best scores are: opt bits E(85289)
NP_003935 (OMIM: 604188) selenium-binding protein ( 472) 3284 736.1 5e-212
NP_001245218 (OMIM: 604188) selenium-binding prote ( 514) 3277 734.5 1.6e-211
NP_001245217 (OMIM: 604188) selenium-binding prote ( 410) 2475 556.9 3.6e-158
XP_016858246 (OMIM: 604188) PREDICTED: selenium-bi ( 283) 1106 253.8 4.5e-67
>>NP_003935 (OMIM: 604188) selenium-binding protein 1 is (472 aa)
initn: 3284 init1: 3284 opt: 3284 Z-score: 3927.5 bits: 736.1 E(85289): 5e-212
Smith-Waterman score: 3284; 100.0% identity (100.0% similar) in 472 aa overlap (1-472:1-472)
10 20 30 40 50 60
pF1KE1 MATKCGNCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MATKCGNCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 HRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVVDVGSEPRAPKLHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 HRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVVDVGSEPRAPKLHK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VIEPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKGGFVLLDGETFEVKGTWERP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VIEPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKGGFVLLDGETFEVKGTWERP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 GGAAPLGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADVEAGLYGSHLYVWDWQRHEIVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GGAAPLGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADVEAGLYGSHLYVWDWQRHEIVQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 TLSLKDGLIPLEIRFLHNPDAAQGFVGCALSSTIQRFYKNEGGTWSVEKVIQVPPKKVKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TLSLKDGLIPLEIRFLHNPDAAQGFVGCALSSTIQRFYKNEGGTWSVEKVIQVPPKKVKG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 WLLPEMPGLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFLGGSIVKGGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 WLLPEMPGLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFLGGSIVKGGP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 VQVLEDEELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYITTSLYSAWDKQFYPDLIRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VQVLEDEELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYITTSLYSAWDKQFYPDLIRE
370 380 390 400 410 420
430 440 450 460 470
pF1KE1 GSVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GSVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI
430 440 450 460 470
>>NP_001245218 (OMIM: 604188) selenium-binding protein 1 (514 aa)
initn: 3277 init1: 3277 opt: 3277 Z-score: 3918.6 bits: 734.5 E(85289): 1.6e-211
Smith-Waterman score: 3277; 100.0% identity (100.0% similar) in 471 aa overlap (2-472:44-514)
10 20 30
pF1KE1 MATKCGNCGPGYSTPLEAMKGPREEIVYLPC
::::::::::::::::::::::::::::::
NP_001 WPAGMCAAERAEGAFTLQSVAQPMRPIASTATKCGNCGPGYSTPLEAMKGPREEIVYLPC
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE1 IYRNTGTEAPDYLATVDVDPKSPQYCQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IYRNTGTEAPDYLATVDVDPKSPQYCQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSR
80 90 100 110 120 130
100 110 120 130 140 150
pF1KE1 TKLVLPSLISSRIYVVDVGSEPRAPKLHKVIEPKDIHAKCELAFLHTSHCLASGEVMISS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TKLVLPSLISSRIYVVDVGSEPRAPKLHKVIEPKDIHAKCELAFLHTSHCLASGEVMISS
140 150 160 170 180 190
160 170 180 190 200 210
pF1KE1 LGDVKGNGKGGFVLLDGETFEVKGTWERPGGAAPLGYDFWYQPRHNVMISTEWAAPNVLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGDVKGNGKGGFVLLDGETFEVKGTWERPGGAAPLGYDFWYQPRHNVMISTEWAAPNVLR
200 210 220 230 240 250
220 230 240 250 260 270
pF1KE1 DGFNPADVEAGLYGSHLYVWDWQRHEIVQTLSLKDGLIPLEIRFLHNPDAAQGFVGCALS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGFNPADVEAGLYGSHLYVWDWQRHEIVQTLSLKDGLIPLEIRFLHNPDAAQGFVGCALS
260 270 280 290 300 310
280 290 300 310 320 330
pF1KE1 STIQRFYKNEGGTWSVEKVIQVPPKKVKGWLLPEMPGLITDILLSLDDRFLYFSNWLHGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STIQRFYKNEGGTWSVEKVIQVPPKKVKGWLLPEMPGLITDILLSLDDRFLYFSNWLHGD
320 330 340 350 360 370
340 350 360 370 380 390
pF1KE1 LRQYDISDPQRPRLTGQLFLGGSIVKGGPVQVLEDEELKSQPEPLVVKGKRVAGGPQMIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRQYDISDPQRPRLTGQLFLGGSIVKGGPVQVLEDEELKSQPEPLVVKGKRVAGGPQMIQ
380 390 400 410 420 430
400 410 420 430 440 450
pF1KE1 LSLDGKRLYITTSLYSAWDKQFYPDLIREGSVMLQVDVDTVKGGLKLNPNFLVDFGKEPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSLDGKRLYITTSLYSAWDKQFYPDLIREGSVMLQVDVDTVKGGLKLNPNFLVDFGKEPL
440 450 460 470 480 490
460 470
pF1KE1 GPALAHELRYPGGDCSSDIWI
:::::::::::::::::::::
NP_001 GPALAHELRYPGGDCSSDIWI
500 510
>>NP_001245217 (OMIM: 604188) selenium-binding protein 1 (410 aa)
initn: 2475 init1: 2475 opt: 2475 Z-score: 2960.6 bits: 556.9 E(85289): 3.6e-158
Smith-Waterman score: 2724; 86.9% identity (86.9% similar) in 472 aa overlap (1-472:1-410)
10 20 30 40 50 60
pF1KE1 MATKCGNCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MATKCGNCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 HRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVVDVGSEPRAPKLHK
NP_001 ------------------------------------------------------------
130 140 150 160 170 180
pF1KE1 VIEPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKGGFVLLDGETFEVKGTWERP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 --EPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKGGFVLLDGETFEVKGTWERP
70 80 90 100 110
190 200 210 220 230 240
pF1KE1 GGAAPLGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADVEAGLYGSHLYVWDWQRHEIVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGAAPLGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADVEAGLYGSHLYVWDWQRHEIVQ
120 130 140 150 160 170
250 260 270 280 290 300
pF1KE1 TLSLKDGLIPLEIRFLHNPDAAQGFVGCALSSTIQRFYKNEGGTWSVEKVIQVPPKKVKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLSLKDGLIPLEIRFLHNPDAAQGFVGCALSSTIQRFYKNEGGTWSVEKVIQVPPKKVKG
180 190 200 210 220 230
310 320 330 340 350 360
pF1KE1 WLLPEMPGLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFLGGSIVKGGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WLLPEMPGLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFLGGSIVKGGP
240 250 260 270 280 290
370 380 390 400 410 420
pF1KE1 VQVLEDEELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYITTSLYSAWDKQFYPDLIRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VQVLEDEELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYITTSLYSAWDKQFYPDLIRE
300 310 320 330 340 350
430 440 450 460 470
pF1KE1 GSVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI
360 370 380 390 400 410
>>XP_016858246 (OMIM: 604188) PREDICTED: selenium-bindin (283 aa)
initn: 1106 init1: 1106 opt: 1106 Z-score: 1325.1 bits: 253.8 E(85289): 4.5e-67
Smith-Waterman score: 1106; 100.0% identity (100.0% similar) in 159 aa overlap (2-160:44-202)
10 20 30
pF1KE1 MATKCGNCGPGYSTPLEAMKGPREEIVYLPC
::::::::::::::::::::::::::::::
XP_016 WPAGMCAAERAEGAFTLQSVAQPMRPIASTATKCGNCGPGYSTPLEAMKGPREEIVYLPC
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE1 IYRNTGTEAPDYLATVDVDPKSPQYCQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IYRNTGTEAPDYLATVDVDPKSPQYCQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSR
80 90 100 110 120 130
100 110 120 130 140 150
pF1KE1 TKLVLPSLISSRIYVVDVGSEPRAPKLHKVIEPKDIHAKCELAFLHTSHCLASGEVMISS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TKLVLPSLISSRIYVVDVGSEPRAPKLHKVIEPKDIHAKCELAFLHTSHCLASGEVMISS
140 150 160 170 180 190
160 170 180 190 200 210
pF1KE1 LGDVKGNGKGGFVLLDGETFEVKGTWERPGGAAPLGYDFWYQPRHNVMISTEWAAPNVLR
:::::::::
XP_016 LGDVKGNGKETEFHHVGQADPELLTSSDPPASASQRAGITGMSHSSPSPGCLNLRNWQIQ
200 210 220 230 240 250
472 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:04:47 2016 done: Mon Nov 7 02:04:48 2016
Total Scan time: 7.410 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]