Result of FASTA (ccds) for
pFN21AE1304
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1304, 289 aa
1>>>pF1KE1304 289 - 289 aa - 289 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2774+/-0.000774; mu= 15.3498+/- 0.047
mean_var=62.8535+/-12.518, 0's: 0 Z-trim(107.7): 16 B-trim: 0 in 0/53
Lambda= 0.161774
statistics sampled from 9717 (9722) to 9717 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.299), width: 16
Scan time: 2.300
The best scores are: opt bits E(32554)
CCDS7299.1 PPA1 gene_id:5464|Hs108|chr10 ( 289) 2036 483.5 7.4e-137
CCDS3667.1 PPA2 gene_id:27068|Hs108|chr4 ( 334) 1162 279.6 2.1e-75
CCDS3669.2 PPA2 gene_id:27068|Hs108|chr4 ( 232) 644 158.6 3.9e-39
CCDS3668.2 PPA2 gene_id:27068|Hs108|chr4 ( 305) 642 158.2 6.8e-39
CCDS34043.1 PPA2 gene_id:27068|Hs108|chr4 ( 168) 449 113.0 1.5e-25
>>CCDS7299.1 PPA1 gene_id:5464|Hs108|chr10 (289 aa)
initn: 2036 init1: 2036 opt: 2036 Z-score: 2570.4 bits: 483.5 E(32554): 7.4e-137
Smith-Waterman score: 2036; 100.0% identity (100.0% similar) in 289 aa overlap (1-289:1-289)
10 20 30 40 50 60
pF1KE1 MSGFSTEERAAPFSLEYRVFLKNEKGQYISPFHDIPIYADKDVFHMVVEVPRWSNAKMEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MSGFSTEERAAPFSLEYRVFLKNEKGQYISPFHDIPIYADKDVFHMVVEVPRWSNAKMEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ATKDPLNPIKQDVKKGKLRYVANLFPYKGYIWNYGAIPQTWEDPGHNDKHTGCCGDNDPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 ATKDPLNPIKQDVKKGKLRYVANLFPYKGYIWNYGAIPQTWEDPGHNDKHTGCCGDNDPI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 DVCEIGSKVCARGEIIGVKVLGILAMIDEGETDWKVIAINVDDPDAANYNDINDVKRLKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 DVCEIGSKVCARGEIIGVKVLGILAMIDEGETDWKVIAINVDDPDAANYNDINDVKRLKP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 GYLEATVDWFRRYKVPDGKPENEFAFNAEFKDKDFAIDIIKSTHDHWKALVTKKTNGKGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 GYLEATVDWFRRYKVPDGKPENEFAFNAEFKDKDFAIDIIKSTHDHWKALVTKKTNGKGI
190 200 210 220 230 240
250 260 270 280
pF1KE1 SCMNTTLSESPFKCDPDAARAIVDALPPPCESACTVPTDVDKWFHHQKN
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 SCMNTTLSESPFKCDPDAARAIVDALPPPCESACTVPTDVDKWFHHQKN
250 260 270 280
>>CCDS3667.1 PPA2 gene_id:27068|Hs108|chr4 (334 aa)
initn: 1274 init1: 1133 opt: 1162 Z-score: 1467.1 bits: 279.6 E(32554): 2.1e-75
Smith-Waterman score: 1269; 61.5% identity (83.2% similar) in 291 aa overlap (1-272:32-322)
10 20 30
pF1KE1 MSGFSTEERAAPFSLEYRVFLKNEKGQYIS
:. . ::::. : : .::.:.:: :.:::
CCDS36 SALLRLLRTGAPAAACLRLGTSAGTGSRRAMALYHTEERGQPCSQNYRLFFKNVTGHYIS
10 20 30 40 50 60
40 50 60 70
pF1KE1 PFHDIPIYAD-----------------KDVFHMVVEVPRWSNAKMEIATKDPLNPIKQDV
::::::. .. ...:.:.::.:::.:::::::::.:.::::: :
CCDS36 PFHDIPLKVNSKEENGIPMKKARNDEYENLFNMIVEIPRWTNAKMEIATKEPMNPIKQYV
70 80 90 100 110 120
80 90 100 110 120 130
pF1KE1 KKGKLRYVANLFPYKGYIWNYGAIPQTWEDPGHNDKHTGCCGDNDPIDVCEIGSKVCARG
: ::::::::.:::::::::::..::::::: ..:: :.: ::::::::::::::. . :
CCDS36 KDGKLRYVANIFPYKGYIWNYGTLPQTWEDPHEKDKSTNCFGDNDPIDVCEIGSKILSCG
130 140 150 160 170 180
140 150 160 170 180 190
pF1KE1 EIIGVKVLGILAMIDEGETDWKVIAINVDDPDAANYNDINDVKRLKPGYLEATVDWFRRY
:.: ::.:::::.:::::::::.::::..::.:....::.:::..::::::::..::: :
CCDS36 EVIHVKILGILALIDEGETDWKLIAINANDPEASKFHDIDDVKKFKPGYLEATLNWFRLY
190 200 210 220 230 240
200 210 220 230 240 250
pF1KE1 KVPDGKPENEFAFNAEFKDKDFAIDIIKSTHDHWKALVTKKTNGKGISCMNTTLSESPFK
:::::::::.::::.:::.: ::...:::::. ::::. :: :: .:.: :. .:.:::.
CCDS36 KVPDGKPENQFAFNGEFKNKAFALEVIKSTHQCWKALLMKKCNGGAINCTNVQISDSPFR
250 260 270 280 290 300
260 270 280
pF1KE1 CDPDAARAIVDALP--PPCESACTVPTDVDKWFHHQKN
: . ::..:... : ::
CCDS36 CTQEEARSLVESVSSSPNKESNEEEQVWHFLGK
310 320 330
>>CCDS3669.2 PPA2 gene_id:27068|Hs108|chr4 (232 aa)
initn: 781 init1: 640 opt: 644 Z-score: 816.1 bits: 158.6 E(32554): 3.9e-39
Smith-Waterman score: 644; 59.9% identity (86.8% similar) in 152 aa overlap (124-272:69-220)
100 110 120 130 140 150
pF1KE1 YGAIPQTWEDPGHNDKHTGCCGDNDPIDVCEIGSK-VCARGEIIGVKVLGILAMIDEGET
...:: . . ::.: ::.:::::.::::::
CCDS36 ERGQPCSQNYRLFFKNVTGHYISPFHDIPLKVNSKEILSCGEVIHVKILGILALIDEGET
40 50 60 70 80 90
160 170 180 190 200 210
pF1KE1 DWKVIAINVDDPDAANYNDINDVKRLKPGYLEATVDWFRRYKVPDGKPENEFAFNAEFKD
:::.::::..::.:....::.:::..::::::::..::: ::::::::::.::::.:::.
CCDS36 DWKLIAINANDPEASKFHDIDDVKKFKPGYLEATLNWFRLYKVPDGKPENQFAFNGEFKN
100 110 120 130 140 150
220 230 240 250 260 270
pF1KE1 KDFAIDIIKSTHDHWKALVTKKTNGKGISCMNTTLSESPFKCDPDAARAIVDALP--PPC
: ::...:::::. ::::. :: :: .:.: :. .:.:::.: . ::..:... :
CCDS36 KAFALEVIKSTHQCWKALLMKKCNGGAINCTNVQISDSPFRCTQEEARSLVESVSSSPNK
160 170 180 190 200 210
280
pF1KE1 ESACTVPTDVDKWFHHQKN
::
CCDS36 ESNEEEQVWHFLGK
220 230
>>CCDS3668.2 PPA2 gene_id:27068|Hs108|chr4 (305 aa)
initn: 1105 init1: 640 opt: 642 Z-score: 811.8 bits: 158.2 E(32554): 6.8e-39
Smith-Waterman score: 1031; 54.3% identity (74.2% similar) in 291 aa overlap (1-272:32-293)
10 20 30
pF1KE1 MSGFSTEERAAPFSLEYRVFLKNEKGQYIS
:. . ::::. : : .::.:.:: :.:::
CCDS36 SALLRLLRTGAPAAACLRLGTSAGTGSRRAMALYHTEERGQPCSQNYRLFFKNVTGHYIS
10 20 30 40 50 60
40 50 60 70
pF1KE1 PFHDIPIYAD-----------------KDVFHMVVEVPRWSNAKMEIATKDPLNPIKQDV
::::::. .. ...:.:.::.:::.:::::::::.:.::::: :
CCDS36 PFHDIPLKVNSKEENGIPMKKARNDEYENLFNMIVEIPRWTNAKMEIATKEPMNPIKQYV
70 80 90 100 110 120
80 90 100 110 120 130
pF1KE1 KKGKLRYVANLFPYKGYIWNYGAIPQTWEDPGHNDKHTGCCGDNDPIDVCEIGSKVCARG
: ::::::::.:::::::::::..:: : : :
CCDS36 KDGKLRYVANIFPYKGYIWNYGTLPQ--------------------ILSC---------G
130 140 150
140 150 160 170 180 190
pF1KE1 EIIGVKVLGILAMIDEGETDWKVIAINVDDPDAANYNDINDVKRLKPGYLEATVDWFRRY
:.: ::.:::::.:::::::::.::::..::.:....::.:::..::::::::..::: :
CCDS36 EVIHVKILGILALIDEGETDWKLIAINANDPEASKFHDIDDVKKFKPGYLEATLNWFRLY
160 170 180 190 200 210
200 210 220 230 240 250
pF1KE1 KVPDGKPENEFAFNAEFKDKDFAIDIIKSTHDHWKALVTKKTNGKGISCMNTTLSESPFK
:::::::::.::::.:::.: ::...:::::. ::::. :: :: .:.: :. .:.:::.
CCDS36 KVPDGKPENQFAFNGEFKNKAFALEVIKSTHQCWKALLMKKCNGGAINCTNVQISDSPFR
220 230 240 250 260 270
260 270 280
pF1KE1 CDPDAARAIVDALP--PPCESACTVPTDVDKWFHHQKN
: . ::..:... : ::
CCDS36 CTQEEARSLVESVSSSPNKESNEEEQVWHFLGK
280 290 300
>>CCDS34043.1 PPA2 gene_id:27068|Hs108|chr4 (168 aa)
initn: 480 init1: 435 opt: 449 Z-score: 572.3 bits: 113.0 E(32554): 1.5e-25
Smith-Waterman score: 449; 57.0% identity (80.7% similar) in 114 aa overlap (164-272:43-156)
140 150 160 170 180 190
pF1KE1 EIIGVKVLGILAMIDEGETDWKVIAINVDDPDAANYN---DINDVKRLKPGYLEATVDWF
: . :: .:.:::..::::::::..::
CCDS34 PAAACLRLGTSAGTGSRRAMALYHTEERGQPCSQNYRLFFNIDDVKKFKPGYLEATLNWF
20 30 40 50 60 70
200 210 220 230 240 250
pF1KE1 RRYKVPDGKPENEFAFNAEFKDKDFAIDIIKSTHDHWKALVTKKTNGKGISCMNTTLSES
: ::::::::::.::::.:::.: ::...:::::. ::::. :: :: .:.: :. .:.:
CCDS34 RLYKVPDGKPENQFAFNGEFKNKAFALEVIKSTHQCWKALLMKKCNGGAINCTNVQISDS
80 90 100 110 120 130
260 270 280
pF1KE1 PFKCDPDAARAIVDALP--PPCESACTVPTDVDKWFHHQKN
::.: . ::..:... : ::
CCDS34 PFRCTQEEARSLVESVSSSPNKESNEEEQVWHFLGK
140 150 160
289 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:56:32 2016 done: Mon Nov 7 02:56:33 2016
Total Scan time: 2.300 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]