FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1301, 140 aa
  1>>>pF1KE1301 140 - 140 aa - 140 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8124+/-0.000917; mu= 13.1269+/- 0.055
 mean_var=52.0840+/-10.422, 0's: 0 Z-trim(104.1): 26  B-trim: 39 in 1/49
 Lambda= 0.177714
 statistics sampled from 7739 (7741) to 7739 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.618), E-opt: 0.2 (0.238), width:  16
 Scan time:  1.640

The best scores are:                                      opt bits E(32554)
CCDS9845.1 C14orf1 gene_id:11161|Hs108|chr14       ( 140)  911 241.3 1.5e-64


>>CCDS9845.1 C14orf1 gene_id:11161|Hs108|chr14            (140 aa)
 initn: 911 init1: 911 opt: 911  Z-score: 1272.4  bits: 241.3 E(32554): 1.5e-64
Smith-Waterman score: 911; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)

               10        20        30        40        50        60
pF1KE1 MSRFLNVLRSWLVMVSIIAMGNTLQSFRDHTFLYEKLYTGKPNLVNGLQARTFGIWTLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MSRFLNVLRSWLVMVSIIAMGNTLQSFRDHTFLYEKLYTGKPNLVNGLQARTFGIWTLLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 SVIRCLCAIDIHNKTLYHITLWTFLLALGHFLSELFVYGTAAPTIGVLAPLMVASFSILG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 SVIRCLCAIDIHNKTLYHITLWTFLLALGHFLSELFVYGTAAPTIGVLAPLMVASFSILG
               70        80        90       100       110       120

              130       140
pF1KE1 MLVGLRYLEVEPVSRQKKRN
       ::::::::::::::::::::
CCDS98 MLVGLRYLEVEPVSRQKKRN
              130       140




140 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 04:13:45 2016 done: Mon Nov  7 04:13:45 2016
 Total Scan time:  1.640 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]