FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1300, 572 aa
  1>>>pF1KE1300 572 - 572 aa - 572 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2720+/-0.000743; mu= 15.2078+/- 0.044
 mean_var=99.0894+/-19.950, 0's: 0 Z-trim(111.8): 21  B-trim: 98 in 1/51
 Lambda= 0.128843
 statistics sampled from 12613 (12630) to 12613 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.388), width:  16
 Scan time:  3.620

The best scores are:                                      opt bits E(32554)
CCDS42843.1 RTP5 gene_id:285093|Hs108|chr2         ( 572) 4077 768.1       0
CCDS2740.1 RTP3 gene_id:83597|Hs108|chr3           ( 232)  325 70.5 2.7e-12


>>CCDS42843.1 RTP5 gene_id:285093|Hs108|chr2              (572 aa)
 initn: 4077 init1: 4077 opt: 4077  Z-score: 4097.8  bits: 768.1 E(32554):    0
Smith-Waterman score: 4077; 100.0% identity (100.0% similar) in 572 aa overlap (1-572:1-572)

               10        20        30        40        50        60
pF1KE1 MDRAGADMWASTFTLAMAERKPQDVWVLLPEHSLVPGCLDGGGVQYLLVGLSRLQCGHCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MDRAGADMWASTFTLAMAERKPQDVWVLLPEHSLVPGCLDGGGVQYLLVGLSRLQCGHCP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GTWDSAHVHVLFHLWWDRASHRGLVKMRIWGQRCRLCPAPGDCQVRPPGEQPFLSRLVLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GTWDSAHVHVLFHLWWDRASHRGLVKMRIWGQRCRLCPAPGDCQVRPPGEQPFLSRLVLH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 ILQDCYGDGPGPARHPREAYEGCCEACELGVCFLQKAPDPAWSANATKGNFPATAWGGTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ILQDCYGDGPGPARHPREAYEGCCEACELGVCFLQKAPDPAWSANATKGNFPATAWGGTG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 TVSRGKPLSTPGDDLGKGGVVIAIPFSLVGTSNDQVPIAEGPAPPAGASLPVTGSCEALV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TVSRGKPLSTPGDDLGKGGVVIAIPFSLVGTSNDQVPIAEGPAPPAGASLPVTGSCEALV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 IGQGSIFLSGDSVAMPGGKGFPVAIGDPLFHGPGLLGSSIQTFELKGFLFKGRGSLCSPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IGQGSIFLSGDSVAMPGGKGFPVAIGDPLFHGPGLLGSSIQTFELKGFLFKGRGSLCSPV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 GVAQGWGPISLNNGLVPVGKHTPTVFYCVGLSASGEGSLTFPSSLTSIFTNTLSEPTDGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GVAQGWGPISLNNGLVPVGKHTPTVFYCVGLSASGEGSLTFPSSLTSIFTNTLSEPTDGP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 VATKEASITFPFIFTDVKDAVAEVAEGNGKEGGGQGLVPVGHDALPETNAGGLPSQVKGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VATKEASITFPFIFTDVKDAVAEVAEGNGKEGGGQGLVPVGHDALPETNAGGLPSQVKGS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 LALPFPADVQGKDAFTDITEGKEKEGGLVTAGHDAPLEANAEGPITVSEGCITIPFAVFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LALPFPADVQGKDAFTDITEGKEKEGGLVTAGHDAPLEANAEGPITVSEGCITIPFAVFD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 VIKRKGGGHVAYGPQGNGCFSQGYYQKRQLRSRFHKARCGCRREEDERPGRACRRPHAEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VIKRKGGGHVAYGPQGNGCFSQGYYQKRQLRSRFHKARCGCRREEDERPGRACRRPHAEP
              490       500       510       520       530       540

              550       560       570  
pF1KE1 YEDFWIWVSMTVCVFWLMCMCRLNPGIYPQQV
       ::::::::::::::::::::::::::::::::
CCDS42 YEDFWIWVSMTVCVFWLMCMCRLNPGIYPQQV
              550       560       570  

>>CCDS2740.1 RTP3 gene_id:83597|Hs108|chr3                (232 aa)
 initn: 351 init1: 273 opt: 325  Z-score: 334.3  bits: 70.5 E(32554): 2.7e-12
Smith-Waterman score: 335; 37.3% identity (59.6% similar) in 161 aa overlap (4-152:2-162)

                10        20        30        40        50         
pF1KE1 MDRAG-ADMWASTFTLAMAERKPQDVWVLLPEHSLVPGCLDGGGVQYLLVGLSRLQCGHC
          :: ...: . :   : : ::   :.: :...:.:. :  : .::    ..:.::. :
CCDS27   MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQYQQWTFARFQCSSC
                 10        20        30        40        50        

      60        70        80        90       100         110       
pF1KE1 PGTWDSAHVHVLFHLWWDRASHRGLVKMRIWGQRCRLCPAP--GDCQVRPPGEQPFLSRL
         .: ::.: ::::. :.. . :: ::::.. :::. :: :   : .    . . .:. :
CCDS27 SRNWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKNL
       60        70        80        90       100       110        

       120        130          140            150       160        
pF1KE1 VLHILQDCY-GDGPGPARHP--RE-AYEG-----CCEACELGVCFLQKAPDPAWSANATK
       :..::. :: :      . :  .. . ::      ::::  : :                
CCDS27 VFRILKKCYRGRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPSQTPR
      120       130       140       150       160       170        

      170       180       190       200       210       220        
pF1KE1 GNFPATAWGGTGTVSRGKPLSTPGDDLGKGGVVIAIPFSLVGTSNDQVPIAEGPAPPAGA
                                                                   
CCDS27 VHSIYKVEEVVKPWASGENVYSYACQNHICRNLSIFCCCVILIVIVVIVVKTAI      
      180       190       200       210       220       230        




572 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 10:59:38 2016 done: Sun Nov  6 10:59:39 2016
 Total Scan time:  3.620 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]