Result of FASTA (omim) for
pFN21AE1299
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1299, 255 aa
1>>>pF1KE1299 255 - 255 aa - 255 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1475+/-0.000371; mu= 15.3930+/- 0.023
mean_var=68.2706+/-14.306, 0's: 0 Z-trim(113.6): 93 B-trim: 575 in 1/52
Lambda= 0.155223
statistics sampled from 22875 (22974) to 22875 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.642), E-opt: 0.2 (0.269), width: 16
Scan time: 6.660
The best scores are: opt bits E(85289)
NP_002113 (OMIM: 146880,212750) HLA class II histo ( 255) 1697 388.9 4.7e-108
NP_064440 (OMIM: 613503) HLA class II histocompati ( 255) 1514 347.9 1e-95
XP_006715142 (OMIM: 146880,212750) PREDICTED: HLA ( 206) 1375 316.7 2e-86
NP_291032 (OMIM: 142880) HLA class II histocompati ( 260) 970 226.1 4.9e-59
NP_001229453 (OMIM: 142880) HLA class II histocomp ( 260) 970 226.1 4.9e-59
NP_001229454 (OMIM: 142880) HLA class II histocomp ( 260) 970 226.1 4.9e-59
NP_002110 (OMIM: 142930) HLA class II histocompati ( 250) 958 223.4 3e-58
NP_061984 (OMIM: 142860) HLA class II histocompati ( 254) 938 218.9 6.9e-57
NP_006111 (OMIM: 142855) HLA class II histocompati ( 261) 362 90.0 4.7e-18
NP_001185787 (OMIM: 615161) HLA class II histocomp ( 227) 244 63.5 3.8e-10
NP_001287719 (OMIM: 615161) HLA class II histocomp ( 264) 241 62.9 6.9e-10
XP_005249108 (OMIM: 615161) PREDICTED: HLA class I ( 275) 241 62.9 7.1e-10
XP_011512862 (OMIM: 615161) PREDICTED: HLA class I ( 256) 238 62.2 1.1e-09
NP_002109 (OMIM: 142856) HLA class II histocompati ( 263) 235 61.5 1.7e-09
NP_002112 (OMIM: 142858) HLA class II histocompati ( 258) 227 59.7 5.9e-09
XP_011546040 (OMIM: 126200,142857,180300,181000) P ( 266) 225 59.3 8.3e-09
NP_002116 (OMIM: 604776) major histocompatibility ( 266) 224 59.1 9.7e-09
XP_011512864 (OMIM: 604776) PREDICTED: major histo ( 276) 224 59.1 1e-08
NP_001230894 (OMIM: 126200,142857,180300,181000) m ( 266) 223 58.8 1.1e-08
NP_002111 (OMIM: 600629) HLA class II histocompati ( 273) 221 58.4 1.6e-08
XP_011512863 (OMIM: 615161) PREDICTED: HLA class I ( 219) 218 57.7 2.1e-08
NP_002115 (OMIM: 126200,142857,180300,181000) majo ( 266) 219 57.9 2.1e-08
NP_072049 (OMIM: 612735) major histocompatibility ( 266) 213 56.6 5.3e-08
NP_620576 (OMIM: 104300,176100,176200,235200,61263 ( 260) 210 55.9 8.3e-08
NP_620577 (OMIM: 104300,176100,176200,235200,61263 ( 246) 194 52.3 9.6e-07
NP_620573 (OMIM: 104300,176100,176200,235200,61263 ( 256) 193 52.1 1.2e-06
NP_620575 (OMIM: 104300,176100,176200,235200,61263 ( 334) 194 52.4 1.2e-06
NP_620579 (OMIM: 104300,176100,176200,235200,61263 ( 168) 190 51.3 1.3e-06
NP_620578 (OMIM: 104300,176100,176200,235200,61263 ( 325) 193 52.2 1.4e-06
XP_016866304 (OMIM: 143110) PREDICTED: HLA class I ( 228) 191 51.6 1.4e-06
NP_000401 (OMIM: 104300,176100,176200,235200,61263 ( 348) 193 52.2 1.5e-06
XP_011512845 (OMIM: 104300,176100,176200,235200,61 ( 348) 193 52.2 1.5e-06
XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343) 192 52.0 1.7e-06
NP_620572 (OMIM: 104300,176100,176200,235200,61263 ( 242) 190 51.4 1.8e-06
XP_016866303 (OMIM: 143110) PREDICTED: HLA class I ( 324) 191 51.7 1.9e-06
NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346) 191 51.7 2e-06
XP_016866302 (OMIM: 143110) PREDICTED: HLA class I ( 388) 191 51.8 2.2e-06
XP_016866301 (OMIM: 143110) PREDICTED: HLA class I ( 420) 191 51.8 2.3e-06
XP_016866299 (OMIM: 143110) PREDICTED: HLA class I ( 435) 191 51.8 2.4e-06
NP_001091949 (OMIM: 143110) HLA class I histocompa ( 442) 191 51.8 2.4e-06
NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337) 189 51.3 2.7e-06
NP_001129491 (OMIM: 601437) IgG receptor FcRn larg ( 365) 189 51.3 2.8e-06
NP_004098 (OMIM: 601437) IgG receptor FcRn large s ( 365) 189 51.3 2.8e-06
XP_016866300 (OMIM: 143110) PREDICTED: HLA class I ( 431) 185 50.5 6.1e-06
XP_016866306 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 181 49.4 7.2e-06
XP_016866307 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 181 49.4 7.2e-06
NP_064455 (OMIM: 146770,613500) immunoglobulin lam ( 213) 179 48.9 8.7e-06
XP_011528471 (OMIM: 146770,613500) PREDICTED: immu ( 214) 179 48.9 8.8e-06
XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254) 177 48.5 1.4e-05
NP_001181928 (OMIM: 600764) major histocompatibili ( 296) 177 48.6 1.6e-05
>>NP_002113 (OMIM: 146880,212750) HLA class II histocomp (255 aa)
initn: 1697 init1: 1697 opt: 1697 Z-score: 2060.9 bits: 388.9 E(85289): 4.7e-108
Smith-Waterman score: 1697; 98.0% identity (100.0% similar) in 255 aa overlap (1-255:1-255)
10 20 30 40 50 60
pF1KE1 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQFTHEFDGDEQFYV
:::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
NP_002 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DLEKKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHAVTEGVSETSFLSKSDHSFFKISYLTFL
:::::::::::::::::::::::::::::::..:::::::::::::::::::::::::::
NP_002 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII
:::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
NP_002 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII
190 200 210 220 230 240
250
pF1KE1 QGLRSVGASRHQGPL
:::::::::::::::
NP_002 QGLRSVGASRHQGPL
250
>>NP_064440 (OMIM: 613503) HLA class II histocompatibili (255 aa)
initn: 1514 init1: 1514 opt: 1514 Z-score: 1839.4 bits: 347.9 E(85289): 1e-95
Smith-Waterman score: 1514; 88.6% identity (96.5% similar) in 255 aa overlap (1-255:1-255)
10 20 30 40 50 60
pF1KE1 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQFTHEFDGDEQFYV
:::::::::::::::.::::::::::::::::: :::.:: .:::::.::::::::.:::
NP_064 MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DLEKKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK
::: :::.:. : :::: .::::.:::::::.::.:..:... :::::::::::::::::
NP_064 DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHAVTEGVSETSFLSKSDHSFFKISYLTFL
:::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
NP_064 FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII
:::::::::::::::::.::::::::::::::::::::.::::::::::.::::::::::
NP_064 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFII
190 200 210 220 230 240
250
pF1KE1 QGLRSVGASRHQGPL
::::::::::::: :
NP_064 QGLRSVGASRHQGLL
250
>>XP_006715142 (OMIM: 146880,212750) PREDICTED: HLA clas (206 aa)
initn: 1375 init1: 1375 opt: 1375 Z-score: 1672.5 bits: 316.7 E(85289): 2e-86
Smith-Waterman score: 1375; 98.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)
10 20 30 40 50 60
pF1KE1 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQFTHEFDGDEQFYV
:::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
XP_006 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DLEKKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHAVTEGVSETSFLSKSDHSFFKISYLTFL
:::::::::::::::::::::::::::::::..:::::::::::::::::::::::::::
XP_006 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII
::::::::::::::::::::::::
XP_006 PSADEIYDCKVEHWGLDQPLLKHWVE
190 200
>>NP_291032 (OMIM: 142880) HLA class II histocompatibili (260 aa)
initn: 925 init1: 888 opt: 970 Z-score: 1180.9 bits: 226.1 E(85289): 4.9e-59
Smith-Waterman score: 970; 57.6% identity (78.8% similar) in 255 aa overlap (1-255:7-260)
10 20 30 40 50
pF1KE1 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQFTHEFDG
:. .:..: ::.:. ..: :. : :::: : . . : . :.:.: :::
NP_291 MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHV-STYAAFVQTHRPTGEFMFEFDE
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 DEQFYVDLEKKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPE
::.:::::.::::.:. ::.. .:. ::.: :.:. ..::: .:.: : : :::. ::
NP_291 DEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 VTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHAVTEGVSETSFLSKSDHSFFKI
:::: : :: ::::::::: .:..::::.:.::: ::. :::::.:. :: ..:.:: :.
NP_291 VTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKF
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 SYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVV
::::.:::...:::.::::::::::::::: . : : : ::::.::::: .:::::.:
NP_291 HYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIV
180 190 200 210 220 230
240 250
pF1KE1 GTVFIIQGLRSVGASRHQGPL
:::.::..::: : :: :
NP_291 GTVLIIKSLRSGHDPRAQGTL
240 250 260
>>NP_001229453 (OMIM: 142880) HLA class II histocompatib (260 aa)
initn: 925 init1: 888 opt: 970 Z-score: 1180.9 bits: 226.1 E(85289): 4.9e-59
Smith-Waterman score: 970; 57.6% identity (78.8% similar) in 255 aa overlap (1-255:7-260)
10 20 30 40 50
pF1KE1 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQFTHEFDG
:. .:..: ::.:. ..: :. : :::: : . . : . :.:.: :::
NP_001 MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHV-STYAAFVQTHRPTGEFMFEFDE
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 DEQFYVDLEKKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPE
::.:::::.::::.:. ::.. .:. ::.: :.:. ..::: .:.: : : :::. ::
NP_001 DEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 VTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHAVTEGVSETSFLSKSDHSFFKI
:::: : :: ::::::::: .:..::::.:.::: ::. :::::.:. :: ..:.:: :.
NP_001 VTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKF
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 SYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVV
::::.:::...:::.::::::::::::::: . : : : ::::.::::: .:::::.:
NP_001 HYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIV
180 190 200 210 220 230
240 250
pF1KE1 GTVFIIQGLRSVGASRHQGPL
:::.::..::: : :: :
NP_001 GTVLIIKSLRSGHDPRAQGTL
240 250 260
>>NP_001229454 (OMIM: 142880) HLA class II histocompatib (260 aa)
initn: 925 init1: 888 opt: 970 Z-score: 1180.9 bits: 226.1 E(85289): 4.9e-59
Smith-Waterman score: 970; 57.6% identity (78.8% similar) in 255 aa overlap (1-255:7-260)
10 20 30 40 50
pF1KE1 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQFTHEFDG
:. .:..: ::.:. ..: :. : :::: : . . : . :.:.: :::
NP_001 MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHV-STYAAFVQTHRPTGEFMFEFDE
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 DEQFYVDLEKKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPE
::.:::::.::::.:. ::.. .:. ::.: :.:. ..::: .:.: : : :::. ::
NP_001 DEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 VTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHAVTEGVSETSFLSKSDHSFFKI
:::: : :: ::::::::: .:..::::.:.::: ::. :::::.:. :: ..:.:: :.
NP_001 VTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKF
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 SYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVV
::::.:::...:::.::::::::::::::: . : : : ::::.::::: .:::::.:
NP_001 HYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIV
180 190 200 210 220 230
240 250
pF1KE1 GTVFIIQGLRSVGASRHQGPL
:::.::..::: : :: :
NP_001 GTVLIIKSLRSGHDPRAQGTL
240 250 260
>>NP_002110 (OMIM: 142930) HLA class II histocompatibili (250 aa)
initn: 965 init1: 943 opt: 958 Z-score: 1166.6 bits: 223.4 E(85289): 3e-58
Smith-Waterman score: 958; 57.4% identity (79.3% similar) in 242 aa overlap (1-242:1-242)
10 20 30 40 50 60
pF1KE1 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQFTHEFDGDEQFYV
: : .:.:: .: :..:: . :::..: : .:: :: ::::::::: .. : :
NP_002 MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DLEKKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK
::.:.:..:: :::. :. :::::.: ..:. : .:.:...: : . : : :.:::. :
NP_002 DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHAVTEGVSETSFLSKSDHSFFKISYLTFL
: : ::::: :::.::::::::.::::: ::..:::::..::: :. :: : :. :: :.
NP_002 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII
:::...:::.::::::: :::.::: ..: : . ::.::::::..::::..::::.::
NP_002 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII
190 200 210 220 230 240
250
pF1KE1 QGLRSVGASRHQGPL
.:
NP_002 MGTYVSSVPR
250
>>NP_061984 (OMIM: 142860) HLA class II histocompatibili (254 aa)
initn: 940 init1: 922 opt: 938 Z-score: 1142.3 bits: 218.9 E(85289): 6.9e-57
Smith-Waterman score: 938; 54.7% identity (77.9% similar) in 258 aa overlap (1-255:1-254)
10 20 30 40 50
pF1KE1 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFY-GP--SGQFTHEFDGDEQ
: .. . .:: . ....:: . : .:: . .:: .: ::.: .:::::
NP_061 MAISGVPVLGFFIIAVLMSAQESWAIKEEHV----IIQAEFYLNPDQSGEFMFDFDGDEI
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 FYVDLEKKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTV
:.::. ::::.:: ::..:..:. :::: :.:: : ::.:: :: : : :: :::::
NP_061 FHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 FSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHAVTEGVSETSFLSKSDHSFFKISYL
...::: : .::.:::..:.. :::::.::: ::. :: ::::: :: . :: : :. ::
NP_061 LTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYL
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 TFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTV
::::....:::.:::::::.::::::: . :.:. : ::.:::::::.::::::..::.
NP_061 PFLPSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTI
180 190 200 210 220 230
240 250
pF1KE1 FIIQGLRSVGASRHQGPL
:::.:::. .:....:::
NP_061 FIIKGLRKSNAAERRGPL
240 250
>>NP_006111 (OMIM: 142855) HLA class II histocompatibili (261 aa)
initn: 346 init1: 141 opt: 362 Z-score: 445.0 bits: 90.0 E(85289): 4.7e-18
Smith-Waterman score: 362; 32.4% identity (64.2% similar) in 204 aa overlap (44-240:55-252)
20 30 40 50 60 70
pF1KE1 LTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQFTHEFDGDEQFYVDLEKKETAWRWPE
:: ... .: :. :. :. .. . : ::
NP_006 WAVPEAPTPMWPDDLQNHTFLHTVYCQDGSPSVGLSEAYDEDQLFFFDFSQNTRVPRLPE
30 40 50 60 70 80
80 90 100 110 120
pF1KE1 FSKFGGFDPQGALRNMAVAKHNLNIMIKRYN-----STAATNEVPEVTVFSKSPVTLGQP
:. .. . :: . :. . ::.. . . .. : . ::. .:. .:.:
NP_006 FADWA--QEQGDAPAILFDKEFCEWMIQQIGPKLDGKIPVSRGFPIAEVFTLKPLEFGKP
90 100 110 120 130 140
130 140 150 160 170 180
pF1KE1 NTLICLVDNIFPPVVNITWLSNGHAV-TEGVSETSFLSKSDH-SFFKISYLTFLPSADEI
:::.:.:.:.:::.....: . :.: .:: . : :.: : :: .:::.: : ..:
NP_006 NTLVCFVSNLFPPMLTVNW--QHHSVPVEGFGPT-FVSAVDGLSFQAFSYLNFTPEPSDI
150 160 170 180 190
190 200 210 220 230 240
pF1KE1 YDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFIIQGLRSV
..: : : . .: :. : :.: :.:.:......:..::.:: :.::
NP_006 FSCIVTHEIDRYTAIAYWVPRNALP-SDLLENVLCGVAFGLGVLGIIVGIVLIIYFRKPC
200 210 220 230 240 250
250
pF1KE1 GASRHQGPL
NP_006 SGD
260
>>NP_001185787 (OMIM: 615161) HLA class II histocompatib (227 aa)
initn: 158 init1: 140 opt: 244 Z-score: 303.1 bits: 63.5 E(85289): 3.8e-10
Smith-Waterman score: 244; 27.3% identity (58.2% similar) in 165 aa overlap (52-215:68-226)
30 40 50 60 70 80
pF1KE1 GGEDIVADHVASCGVNLYQFYGPSGQFTHEFDGDE-QFYVDLEKKETAWRWPEFSKFGGF
::.: .: . : .. : ... : .
NP_001 QFKGMCYFTNGTERVRGVARYIYNREEYGRFDSDVGEFQAVTELGRSIEDWNNYKDF--L
40 50 60 70 80 90
90 100 110 120 130 140
pF1KE1 DPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFP
. . : . : .:: . .. .: . : ::. . .:.. : :.: : ...:
NP_001 EQERAAVD-KVCRHNYEAELR---TTLQRQVEPTVTISPSRTEALNHHNLLVCSVTDFYP
100 110 120 130 140 150
150 160 170 180 190 200
pF1KE1 PVVNITWLSNGHAVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDQPL
... :. : . : :: ::.. ..: .: . .: . :. .:: :.::: .:..:.
NP_001 AQIKVRWFRNDQEETAGVVSTSLIRNGDWTFQILVMLEITPQRGDIYTCQVEHPSLQSPI
160 170 180 190 200 210
210 220 230 240 250
pF1KE1 LKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFIIQGLRSVGASRHQGPL
.:.:. : : . :
NP_001 TVEWRPRGPPPAGLLH
220
255 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 20:36:22 2016 done: Sun Nov 6 20:36:24 2016
Total Scan time: 6.660 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]