Result of FASTA (omim) for
pFN21AE1260
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1260, 595 aa
1>>>pF1KE1260 595 - 595 aa - 595 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.4889+/-0.00041; mu= -5.0878+/- 0.026
mean_var=542.1499+/-112.892, 0's: 0 Z-trim(125.0): 1513 B-trim: 0 in 0/58
Lambda= 0.055083
statistics sampled from 46019 (47818) to 46019 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.561), width: 16
Scan time: 13.460
The best scores are: opt bits E(85289)
NP_001129711 (OMIM: 616982,617039) putative histon ( 595) 4210 349.2 2.2e-95
XP_011542028 (OMIM: 616982,617039) PREDICTED: puta ( 395) 2814 238.1 4.3e-62
NP_067632 (OMIM: 616458,616488) PR domain zinc fin ( 367) 419 47.7 8.1e-05
XP_016882236 (OMIM: 165260) PREDICTED: zinc finger ( 327) 404 46.5 0.00017
XP_011525220 (OMIM: 165260) PREDICTED: zinc finger ( 327) 404 46.5 0.00017
NP_001166122 (OMIM: 601276) zinc finger protein 17 ( 481) 404 46.7 0.00022
XP_006723255 (OMIM: 165260) PREDICTED: zinc finger ( 491) 404 46.7 0.00022
XP_011525219 (OMIM: 165260) PREDICTED: zinc finger ( 491) 404 46.7 0.00022
NP_001308045 (OMIM: 165260) zinc finger and SCAN d ( 491) 404 46.7 0.00022
NP_862829 (OMIM: 165260) zinc finger and SCAN doma ( 491) 404 46.7 0.00022
NP_005665 (OMIM: 601069) zinc finger protein 239 i ( 458) 400 46.3 0.00026
XP_005271889 (OMIM: 601069) PREDICTED: zinc finger ( 458) 400 46.3 0.00026
NP_001311277 (OMIM: 601069) zinc finger protein 23 ( 458) 400 46.3 0.00026
XP_011538540 (OMIM: 601069) PREDICTED: zinc finger ( 458) 400 46.3 0.00026
XP_006718066 (OMIM: 601069) PREDICTED: zinc finger ( 458) 400 46.3 0.00026
NP_001311279 (OMIM: 601069) zinc finger protein 23 ( 458) 400 46.3 0.00026
NP_001311276 (OMIM: 601069) zinc finger protein 23 ( 458) 400 46.3 0.00026
NP_001092754 (OMIM: 601069) zinc finger protein 23 ( 458) 400 46.3 0.00026
NP_001092753 (OMIM: 601069) zinc finger protein 23 ( 458) 400 46.3 0.00026
NP_001311278 (OMIM: 601069) zinc finger protein 23 ( 458) 400 46.3 0.00026
NP_001092752 (OMIM: 601069) zinc finger protein 23 ( 458) 400 46.3 0.00026
NP_001311280 (OMIM: 601069) zinc finger protein 23 ( 458) 400 46.3 0.00026
NP_001311281 (OMIM: 601069) zinc finger protein 23 ( 500) 400 46.4 0.00028
XP_011538539 (OMIM: 601069) PREDICTED: zinc finger ( 500) 400 46.4 0.00028
XP_011538537 (OMIM: 601069) PREDICTED: zinc finger ( 500) 400 46.4 0.00028
XP_011538536 (OMIM: 601069) PREDICTED: zinc finger ( 500) 400 46.4 0.00028
XP_016872229 (OMIM: 601069) PREDICTED: zinc finger ( 500) 400 46.4 0.00028
XP_006718064 (OMIM: 601069) PREDICTED: zinc finger ( 500) 400 46.4 0.00028
XP_011538538 (OMIM: 601069) PREDICTED: zinc finger ( 500) 400 46.4 0.00028
NP_001311282 (OMIM: 601069) zinc finger protein 23 ( 571) 400 46.4 0.0003
XP_011538534 (OMIM: 601069) PREDICTED: zinc finger ( 602) 400 46.5 0.00031
XP_016881658 (OMIM: 604751) PREDICTED: zinc finger ( 319) 385 44.9 0.00048
XP_016881657 (OMIM: 604751) PREDICTED: zinc finger ( 319) 385 44.9 0.00048
XP_016881660 (OMIM: 604751) PREDICTED: zinc finger ( 319) 385 44.9 0.00048
XP_016881659 (OMIM: 604751) PREDICTED: zinc finger ( 319) 385 44.9 0.00048
XP_016881661 (OMIM: 604751) PREDICTED: zinc finger ( 319) 385 44.9 0.00048
XP_011526674 (OMIM: 611811) PREDICTED: zinc finger ( 434) 388 45.3 0.00049
XP_011526673 (OMIM: 611811) PREDICTED: zinc finger ( 476) 388 45.4 0.00052
XP_005259469 (OMIM: 604749) PREDICTED: zinc finger ( 734) 392 45.9 0.00055
XP_016882860 (OMIM: 611811) PREDICTED: zinc finger ( 519) 388 45.4 0.00055
NP_004225 (OMIM: 604749) zinc finger protein 235 [ ( 738) 392 45.9 0.00056
XP_005259428 (OMIM: 610671) PREDICTED: zinc finger (1055) 396 46.4 0.00056
NP_149104 (OMIM: 610671) zinc finger protein 628 [ (1059) 396 46.4 0.00056
XP_011526667 (OMIM: 611811) PREDICTED: zinc finger ( 556) 388 45.5 0.00058
XP_016882858 (OMIM: 611811) PREDICTED: zinc finger ( 556) 388 45.5 0.00058
XP_016882859 (OMIM: 611811) PREDICTED: zinc finger ( 556) 388 45.5 0.00058
XP_011526669 (OMIM: 611811) PREDICTED: zinc finger ( 556) 388 45.5 0.00058
XP_011526671 (OMIM: 611811) PREDICTED: zinc finger ( 556) 388 45.5 0.00058
XP_011526665 (OMIM: 611811) PREDICTED: zinc finger ( 556) 388 45.5 0.00058
XP_011526668 (OMIM: 611811) PREDICTED: zinc finger ( 556) 388 45.5 0.00058
>>NP_001129711 (OMIM: 616982,617039) putative histone-ly (595 aa)
initn: 4210 init1: 4210 opt: 4210 Z-score: 1833.3 bits: 349.2 E(85289): 2.2e-95
Smith-Waterman score: 4210; 100.0% identity (100.0% similar) in 595 aa overlap (1-595:1-595)
10 20 30 40 50 60
pF1KE1 MLKPGDPGGSAFLKVDPAYLQHWQQLFPHGGAGPLKGSGAAGLLSAPQPLQPPPPPPPPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLKPGDPGGSAFLKVDPAYLQHWQQLFPHGGAGPLKGSGAAGLLSAPQPLQPPPPPPPPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 RAEPPPDSLRPRPASLSSASSTPASSSTSASSASSCAAAAAAAALAGLSALPVSQLPVFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RAEPPPDSLRPRPASLSSASSTPASSSTSASSASSCAAAAAAAALAGLSALPVSQLPVFA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 PLAAAAVAAEPLPPKELCLGATSGPGPVKCGGGGGGGGEGRGAPRFRCSAEELDYYLYGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLAAAAVAAEPLPPKELCLGATSGPGPVKCGGGGGGGGEGRGAPRFRCSAEELDYYLYGQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 QRMEIIPLNQHTSDPNNRCDMCADNRNGECPMHGPLHSLRRLVGTSSAAAAAPPPELPEW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QRMEIIPLNQHTSDPNNRCDMCADNRNGECPMHGPLHSLRRLVGTSSAAAAAPPPELPEW
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 LRDLPREVCLCTSTVPGLAYGICAAQRIQQGTWIGPFQGVLLPPEKVQAGAVRNTQHLWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRDLPREVCLCTSTVPGLAYGICAAQRIQQGTWIGPFQGVLLPPEKVQAGAVRNTQHLWE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 IYDQDGTLQHFIDGGEPSKSSWMRYIRCARHCGEQNLTVVQYRSNIFYRACIDIPRGTEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IYDQDGTLQHFIDGGEPSKSSWMRYIRCARHCGEQNLTVVQYRSNIFYRACIDIPRGTEL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 LVWYNDSYTSFFGIPLQCIAQDENLNVPSTVMEAMCRQDALQPFNKSSKLAPTTQQRSVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVWYNDSYTSFFGIPLQCIAQDENLNVPSTVMEAMCRQDALQPFNKSSKLAPTTQQRSVV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE1 FPQTPCSRNFSLLDKSGPIESGFNQINVKNQRVLASPTSTSQLHSEFSDWHLWKCGQCFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FPQTPCSRNFSLLDKSGPIESGFNQINVKNQRVLASPTSTSQLHSEFSDWHLWKCGQCFK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE1 TFTQRILLQMHVCTQNPDRPYQCGHCSQSFSQPSELRNHVVTHSSDRPFKCGYCGRAFAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TFTQRILLQMHVCTQNPDRPYQCGHCSQSFSQPSELRNHVVTHSSDRPFKCGYCGRAFAG
490 500 510 520 530 540
550 560 570 580 590
pF1KE1 ATTLNNHIRTHTGEKPFKCERCERSFTQATQLSRHQRMPNECKPITESPESIEVD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATTLNNHIRTHTGEKPFKCERCERSFTQATQLSRHQRMPNECKPITESPESIEVD
550 560 570 580 590
>>XP_011542028 (OMIM: 616982,617039) PREDICTED: putative (395 aa)
initn: 2814 init1: 2814 opt: 2814 Z-score: 1235.7 bits: 238.1 E(85289): 4.3e-62
Smith-Waterman score: 2814; 100.0% identity (100.0% similar) in 395 aa overlap (201-595:1-395)
180 190 200 210 220 230
pF1KE1 EELDYYLYGQQRMEIIPLNQHTSDPNNRCDMCADNRNGECPMHGPLHSLRRLVGTSSAAA
::::::::::::::::::::::::::::::
XP_011 MCADNRNGECPMHGPLHSLRRLVGTSSAAA
10 20 30
240 250 260 270 280 290
pF1KE1 AAPPPELPEWLRDLPREVCLCTSTVPGLAYGICAAQRIQQGTWIGPFQGVLLPPEKVQAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AAPPPELPEWLRDLPREVCLCTSTVPGLAYGICAAQRIQQGTWIGPFQGVLLPPEKVQAG
40 50 60 70 80 90
300 310 320 330 340 350
pF1KE1 AVRNTQHLWEIYDQDGTLQHFIDGGEPSKSSWMRYIRCARHCGEQNLTVVQYRSNIFYRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AVRNTQHLWEIYDQDGTLQHFIDGGEPSKSSWMRYIRCARHCGEQNLTVVQYRSNIFYRA
100 110 120 130 140 150
360 370 380 390 400 410
pF1KE1 CIDIPRGTELLVWYNDSYTSFFGIPLQCIAQDENLNVPSTVMEAMCRQDALQPFNKSSKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CIDIPRGTELLVWYNDSYTSFFGIPLQCIAQDENLNVPSTVMEAMCRQDALQPFNKSSKL
160 170 180 190 200 210
420 430 440 450 460 470
pF1KE1 APTTQQRSVVFPQTPCSRNFSLLDKSGPIESGFNQINVKNQRVLASPTSTSQLHSEFSDW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 APTTQQRSVVFPQTPCSRNFSLLDKSGPIESGFNQINVKNQRVLASPTSTSQLHSEFSDW
220 230 240 250 260 270
480 490 500 510 520 530
pF1KE1 HLWKCGQCFKTFTQRILLQMHVCTQNPDRPYQCGHCSQSFSQPSELRNHVVTHSSDRPFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HLWKCGQCFKTFTQRILLQMHVCTQNPDRPYQCGHCSQSFSQPSELRNHVVTHSSDRPFK
280 290 300 310 320 330
540 550 560 570 580 590
pF1KE1 CGYCGRAFAGATTLNNHIRTHTGEKPFKCERCERSFTQATQLSRHQRMPNECKPITESPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CGYCGRAFAGATTLNNHIRTHTGEKPFKCERCERSFTQATQLSRHQRMPNECKPITESPE
340 350 360 370 380 390
pF1KE1 SIEVD
:::::
XP_011 SIEVD
>>NP_067632 (OMIM: 616458,616488) PR domain zinc finger (367 aa)
initn: 758 init1: 308 opt: 419 Z-score: 207.5 bits: 47.7 E(85289): 8.1e-05
Smith-Waterman score: 512; 31.2% identity (52.5% similar) in 343 aa overlap (244-586:84-328)
220 230 240 250 260 270
pF1KE1 GPLHSLRRLVGTSSAAAAAPPPELPEWLRDLPREVCLCTSTVPGLAYGICAAQRIQQGTW
:: :: . :..:: . :: . :. ::
NP_067 SHHASPKTAFTAEVLAQSFSGEVQKLSSLVLPAEVIIAQSSIPGEGLGIFSKTWIKAGTE
60 70 80 90 100 110
280 290 300 310 320 330
pF1KE1 IGPFQGVLLPPEKVQAGAVRNTQHLWEIYDQDGTLQHFIDGGEPSKSSWMRYIRCARHCG
.::: : .. ::.:. .:.. .::....:::...:::... .. ::: ::.:::.
NP_067 MGPFTGRVIAPEHVD--ICKNNNLMWEVFNEDGTVRYFIDASQEDHRSWMTYIKCARNEQ
120 130 140 150 160 170
340 350 360 370 380 390
pF1KE1 EQNLTVVQYRSNIFYRACIDIPRGTELLVWYNDSYTSFFGIPLQCIAQDENLNVPSTVME
:::: ::: ..:::.: :: ::::::..:...:.::: .::. .:
NP_067 EQNLEVVQIGTSIFYKAIEMIPPDQELLVWYGNSHNTFLGIP----------GVPG--LE
180 190 200 210
400 410 420 430 440 450
pF1KE1 AMCRQDALQPFNKSSKLAPTTQQRSVVFPQTPCSRNFSLLDKSGPIESGFNQINVKNQRV
.: : :: . :. . .:: .: :.
NP_067 ----ED--QKKNKHEDFHPADS-------------------AAGP--AG---------RM
220 230 240
460 470 480 490 500 510
pF1KE1 LASPTSTSQLHSEFSDWHLWKCGQCFKTFTQRILLQMHVCTQNPDRPYQCGHCSQSFSQP
.: : . :..:
NP_067 --------------------RCVICHRGFNSR----------------------------
250
520 530 540 550 560 570
pF1KE1 SELRNHVVTHSSDRPFKCGYCGRAFAGATTLNNHIRTHTGEKPFKCERCERSFTQATQLS
:.::.:. :. :.:: : .:.: :. ..:: ::.: ::::.:.::. :. ...: . :
NP_067 SNLRSHMRIHTLDKPFVCRFCNRRFSQSSTLRNHVRLHTGERPYKCQVCQSAYSQLAGLR
260 270 280 290 300 310
580 590
pF1KE1 RHQRMPNECKPITESPESIEVD
::. . : :
NP_067 AHQKSARHRPPSTALQAHSPALPAPHAHAPALAAAAAAAAAAAAHHLPAMVL
320 330 340 350 360
>>XP_016882236 (OMIM: 165260) PREDICTED: zinc finger and (327 aa)
initn: 427 init1: 383 opt: 404 Z-score: 201.6 bits: 46.5 E(85289): 0.00017
Smith-Waterman score: 404; 31.3% identity (65.1% similar) in 195 aa overlap (396-584:106-299)
370 380 390 400 410 420
pF1KE1 DSYTSFFGIPLQCIAQDENLNVPSTVMEAMCRQDALQPFNKSSKLAP--TTQQRSVVFPQ
::. . :...: : :..:.. .
XP_016 EKPPSEDKFDLVDAYGTEPPYTYSGKRSSKCRE-CRKMFQSASALEAHQKTHSRKTPYAC
80 90 100 110 120 130
430 440 450 460 470
pF1KE1 TPCSRNFSL---LDKSGPIESGFNQINVKN-QRVLASPTSTSQLHSEFSDWHLWKCGQCF
. :.. :: : . ...: . . :. .... : .: . . . .:::.:
XP_016 SECGKAFSRSTHLAQHQVVHTGAKPHECKECGKAFSRVTHLTQHQRIHTGEKPYKCGECG
140 150 160 170 180 190
480 490 500 510 520 530
pF1KE1 KTFTQRILLQMHVCTQNPDRPYQCGHCSQSFSQPSELRNHVVTHSSDRPFKCGYCGRAFA
:::.. : .: ... .:::.: :...::: ..: .: :....:.:: :::::.
XP_016 KTFSRSTHLTQHQRVHTGERPYECDACGKAFSQSTHLTQHQRIHTGEKPYKCDACGRAFS
200 210 220 230 240 250
540 550 560 570 580 590
pF1KE1 GATTLNNHIRTHTGEKPFKCERCERSFTQATQLSRHQRMPNECKPITESPESIEVD
..: :.: :.::::..:. : ..:.:...: .:::. . ::
XP_016 DCSALIRHLRIHSGEKPYQCKVCPKAFAQSSSLIEHQRIHTGEKPYKCSDCGKAFSRSSA
260 270 280 290 300 310
XP_016 LMVHLRIHITVLQ
320
>>XP_011525220 (OMIM: 165260) PREDICTED: zinc finger and (327 aa)
initn: 427 init1: 383 opt: 404 Z-score: 201.6 bits: 46.5 E(85289): 0.00017
Smith-Waterman score: 404; 31.3% identity (65.1% similar) in 195 aa overlap (396-584:106-299)
370 380 390 400 410 420
pF1KE1 DSYTSFFGIPLQCIAQDENLNVPSTVMEAMCRQDALQPFNKSSKLAP--TTQQRSVVFPQ
::. . :...: : :..:.. .
XP_011 EKPPSEDKFDLVDAYGTEPPYTYSGKRSSKCRE-CRKMFQSASALEAHQKTHSRKTPYAC
80 90 100 110 120 130
430 440 450 460 470
pF1KE1 TPCSRNFSL---LDKSGPIESGFNQINVKN-QRVLASPTSTSQLHSEFSDWHLWKCGQCF
. :.. :: : . ...: . . :. .... : .: . . . .:::.:
XP_011 SECGKAFSRSTHLAQHQVVHTGAKPHECKECGKAFSRVTHLTQHQRIHTGEKPYKCGECG
140 150 160 170 180 190
480 490 500 510 520 530
pF1KE1 KTFTQRILLQMHVCTQNPDRPYQCGHCSQSFSQPSELRNHVVTHSSDRPFKCGYCGRAFA
:::.. : .: ... .:::.: :...::: ..: .: :....:.:: :::::.
XP_011 KTFSRSTHLTQHQRVHTGERPYECDACGKAFSQSTHLTQHQRIHTGEKPYKCDACGRAFS
200 210 220 230 240 250
540 550 560 570 580 590
pF1KE1 GATTLNNHIRTHTGEKPFKCERCERSFTQATQLSRHQRMPNECKPITESPESIEVD
..: :.: :.::::..:. : ..:.:...: .:::. . ::
XP_011 DCSALIRHLRIHSGEKPYQCKVCPKAFAQSSSLIEHQRIHTGEKPYKCSDCGKAFSRSSA
260 270 280 290 300 310
XP_011 LMVHLRIHITVLQ
320
>>NP_001166122 (OMIM: 601276) zinc finger protein 177 is (481 aa)
initn: 693 init1: 332 opt: 404 Z-score: 199.7 bits: 46.7 E(85289): 0.00022
Smith-Waterman score: 411; 26.8% identity (58.1% similar) in 339 aa overlap (257-584:77-395)
230 240 250 260 270 280
pF1KE1 SAAAAAPPPELPEWLRDLPREVCLCTSTVPGLAYGICAAQRIQQGTWIGPFQGVLLPPEK
:. : :: . : . : . . . ..
NP_001 FRNLASVGYQLCRHSLISKVDQEQLKTDERGILQGDCADWETQ----LKPKDTIAM--QN
50 60 70 80 90 100
290 300 310 320 330 340
pF1KE1 VQAGAVRNTQHLWEIYDQDGTLQHFIDGGEPSK-SSWMRYIRCARHC-GEQNLTVVQYRS
. .: . : . : .: : .: .. .. .: . :.: :.:.: ::. ..: :
NP_001 IPGGKTSNGINTAE--NQPG--EHSLECNHCGKFRKNTRFI-CTRYCKGEKCYKYIKY-S
110 120 130 140 150
350 360 370 380 390
pF1KE1 NIF-----YRACIDIPRGTELLVWYNDSYTSFFGIPLQCIAQDENLNVPS--TVME-AMC
..: :. ..: : . : ..: .: : . ..: .:. .: .:
NP_001 KVFNHPSTLRSHVSIHIGEKTLE-FTDCRKAFN----QESSLRKHLRTPTGQKFQEYEQC
160 170 180 190 200
400 410 420 430 440 450
pF1KE1 RQD-ALQPFNKSSKLAPTTQQRSVVFPQTPCSRNFSLLDKSGPIESGFNQINVKNQRVLA
.. .:. . . :: .. . : .:. :.: .: :. . : .......
NP_001 DMSFSLHSSCSVREQIPTGEKGDECSDYGKIS-PLSVHTKTGSVEEGL-ECN-EHEKTFT
210 220 230 240 250 260
460 470 480 490 500 510
pF1KE1 SPTSTSQLHSEFSDWHLWKCGQCFKTFTQRILLQMHVCTQNPDRPYQCGHCSQSFSQPSE
.: : .. : ..:..: :.: . :. :. ... ..::.: ::..:::: :.
NP_001 DPLSLQNCVRTHSGEMPYECSDCGKAFIFQSSLKKHMRSHTGEKPYECDHCGKSFSQSSH
270 280 290 300 310 320
520 530 540 550 560 570
pF1KE1 LRNHVVTHSSDRPFKCGYCGRAFAGATTLNNHIRTHTGEKPFKCERCERSFTQATQLSRH
: : ::....:. : ::.::. ..:..:.::::::::..: : ..: . ..:..:
NP_001 LNVHKRTHTGEKPYDCKECGKAFTVPSSLQKHVRTHTGEKPYECSDCGKAFIDQSSLKKH
330 340 350 360 370 380
580 590
pF1KE1 QRMPNECKPITESPESIEVD
: . ::
NP_001 TRSHTGEKPYECNQCGKSFSTGSYLIVHKRTHTGEKTYECKECGKAFRNSSCLRVHVRTH
390 400 410 420 430 440
>>XP_006723255 (OMIM: 165260) PREDICTED: zinc finger and (491 aa)
initn: 528 init1: 383 opt: 404 Z-score: 199.6 bits: 46.7 E(85289): 0.00022
Smith-Waterman score: 404; 31.3% identity (65.1% similar) in 195 aa overlap (396-584:270-463)
370 380 390 400 410 420
pF1KE1 DSYTSFFGIPLQCIAQDENLNVPSTVMEAMCRQDALQPFNKSSKLAP--TTQQRSVVFPQ
::. . :...: : :..:.. .
XP_006 EKPPSEDKFDLVDAYGTEPPYTYSGKRSSKCRE-CRKMFQSASALEAHQKTHSRKTPYAC
240 250 260 270 280 290
430 440 450 460 470
pF1KE1 TPCSRNFSL---LDKSGPIESGFNQINVKN-QRVLASPTSTSQLHSEFSDWHLWKCGQCF
. :.. :: : . ...: . . :. .... : .: . . . .:::.:
XP_006 SECGKAFSRSTHLAQHQVVHTGAKPHECKECGKAFSRVTHLTQHQRIHTGEKPYKCGECG
300 310 320 330 340 350
480 490 500 510 520 530
pF1KE1 KTFTQRILLQMHVCTQNPDRPYQCGHCSQSFSQPSELRNHVVTHSSDRPFKCGYCGRAFA
:::.. : .: ... .:::.: :...::: ..: .: :....:.:: :::::.
XP_006 KTFSRSTHLTQHQRVHTGERPYECDACGKAFSQSTHLTQHQRIHTGEKPYKCDACGRAFS
360 370 380 390 400 410
540 550 560 570 580 590
pF1KE1 GATTLNNHIRTHTGEKPFKCERCERSFTQATQLSRHQRMPNECKPITESPESIEVD
..: :.: :.::::..:. : ..:.:...: .:::. . ::
XP_006 DCSALIRHLRIHSGEKPYQCKVCPKAFAQSSSLIEHQRIHTGEKPYKCSDCGKAFSRSSA
420 430 440 450 460 470
XP_006 LMVHLRIHITVLQ
480 490
>>XP_011525219 (OMIM: 165260) PREDICTED: zinc finger and (491 aa)
initn: 528 init1: 383 opt: 404 Z-score: 199.6 bits: 46.7 E(85289): 0.00022
Smith-Waterman score: 404; 31.3% identity (65.1% similar) in 195 aa overlap (396-584:270-463)
370 380 390 400 410 420
pF1KE1 DSYTSFFGIPLQCIAQDENLNVPSTVMEAMCRQDALQPFNKSSKLAP--TTQQRSVVFPQ
::. . :...: : :..:.. .
XP_011 EKPPSEDKFDLVDAYGTEPPYTYSGKRSSKCRE-CRKMFQSASALEAHQKTHSRKTPYAC
240 250 260 270 280 290
430 440 450 460 470
pF1KE1 TPCSRNFSL---LDKSGPIESGFNQINVKN-QRVLASPTSTSQLHSEFSDWHLWKCGQCF
. :.. :: : . ...: . . :. .... : .: . . . .:::.:
XP_011 SECGKAFSRSTHLAQHQVVHTGAKPHECKECGKAFSRVTHLTQHQRIHTGEKPYKCGECG
300 310 320 330 340 350
480 490 500 510 520 530
pF1KE1 KTFTQRILLQMHVCTQNPDRPYQCGHCSQSFSQPSELRNHVVTHSSDRPFKCGYCGRAFA
:::.. : .: ... .:::.: :...::: ..: .: :....:.:: :::::.
XP_011 KTFSRSTHLTQHQRVHTGERPYECDACGKAFSQSTHLTQHQRIHTGEKPYKCDACGRAFS
360 370 380 390 400 410
540 550 560 570 580 590
pF1KE1 GATTLNNHIRTHTGEKPFKCERCERSFTQATQLSRHQRMPNECKPITESPESIEVD
..: :.: :.::::..:. : ..:.:...: .:::. . ::
XP_011 DCSALIRHLRIHSGEKPYQCKVCPKAFAQSSSLIEHQRIHTGEKPYKCSDCGKAFSRSSA
420 430 440 450 460 470
XP_011 LMVHLRIHITVLQ
480 490
>>NP_001308045 (OMIM: 165260) zinc finger and SCAN domai (491 aa)
initn: 528 init1: 383 opt: 404 Z-score: 199.6 bits: 46.7 E(85289): 0.00022
Smith-Waterman score: 404; 31.3% identity (65.1% similar) in 195 aa overlap (396-584:270-463)
370 380 390 400 410 420
pF1KE1 DSYTSFFGIPLQCIAQDENLNVPSTVMEAMCRQDALQPFNKSSKLAP--TTQQRSVVFPQ
::. . :...: : :..:.. .
NP_001 EKPPSEDKFDLVDAYGTEPPYTYSGKRSSKCRE-CRKMFQSASALEAHQKTHSRKTPYAC
240 250 260 270 280 290
430 440 450 460 470
pF1KE1 TPCSRNFSL---LDKSGPIESGFNQINVKN-QRVLASPTSTSQLHSEFSDWHLWKCGQCF
. :.. :: : . ...: . . :. .... : .: . . . .:::.:
NP_001 SECGKAFSRSTHLAQHQVVHTGAKPHECKECGKAFSRVTHLTQHQRIHTGEKPYKCGECG
300 310 320 330 340 350
480 490 500 510 520 530
pF1KE1 KTFTQRILLQMHVCTQNPDRPYQCGHCSQSFSQPSELRNHVVTHSSDRPFKCGYCGRAFA
:::.. : .: ... .:::.: :...::: ..: .: :....:.:: :::::.
NP_001 KTFSRSTHLTQHQRVHTGERPYECDACGKAFSQSTHLTQHQRIHTGEKPYKCDACGRAFS
360 370 380 390 400 410
540 550 560 570 580 590
pF1KE1 GATTLNNHIRTHTGEKPFKCERCERSFTQATQLSRHQRMPNECKPITESPESIEVD
..: :.: :.::::..:. : ..:.:...: .:::. . ::
NP_001 DCSALIRHLRIHSGEKPYQCKVCPKAFAQSSSLIEHQRIHTGEKPYKCSDCGKAFSRSSA
420 430 440 450 460 470
NP_001 LMVHLRIHITVLQ
480 490
>>NP_862829 (OMIM: 165260) zinc finger and SCAN domain-c (491 aa)
initn: 528 init1: 383 opt: 404 Z-score: 199.6 bits: 46.7 E(85289): 0.00022
Smith-Waterman score: 404; 31.3% identity (65.1% similar) in 195 aa overlap (396-584:270-463)
370 380 390 400 410 420
pF1KE1 DSYTSFFGIPLQCIAQDENLNVPSTVMEAMCRQDALQPFNKSSKLAP--TTQQRSVVFPQ
::. . :...: : :..:.. .
NP_862 EKPPSEDKFDLVDAYGTEPPYTYSGKRSSKCRE-CRKMFQSASALEAHQKTHSRKTPYAC
240 250 260 270 280 290
430 440 450 460 470
pF1KE1 TPCSRNFSL---LDKSGPIESGFNQINVKN-QRVLASPTSTSQLHSEFSDWHLWKCGQCF
. :.. :: : . ...: . . :. .... : .: . . . .:::.:
NP_862 SECGKAFSRSTHLAQHQVVHTGAKPHECKECGKAFSRVTHLTQHQRIHTGEKPYKCGECG
300 310 320 330 340 350
480 490 500 510 520 530
pF1KE1 KTFTQRILLQMHVCTQNPDRPYQCGHCSQSFSQPSELRNHVVTHSSDRPFKCGYCGRAFA
:::.. : .: ... .:::.: :...::: ..: .: :....:.:: :::::.
NP_862 KTFSRSTHLTQHQRVHTGERPYECDACGKAFSQSTHLTQHQRIHTGEKPYKCDACGRAFS
360 370 380 390 400 410
540 550 560 570 580 590
pF1KE1 GATTLNNHIRTHTGEKPFKCERCERSFTQATQLSRHQRMPNECKPITESPESIEVD
..: :.: :.::::..:. : ..:.:...: .:::. . ::
NP_862 DCSALIRHLRIHSGEKPYQCKVCPKAFAQSSSLIEHQRIHTGEKPYKCSDCGKAFSRSSA
420 430 440 450 460 470
NP_862 LMVHLRIHITVLQ
480 490
595 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 03:48:33 2016 done: Thu Nov 3 03:48:35 2016
Total Scan time: 13.460 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]