FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1247, 482 aa
  1>>>pF1KE1247 482 - 482 aa - 482 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.8174+/-0.00127; mu= -5.5403+/- 0.075
 mean_var=417.0930+/-89.522, 0's: 0 Z-trim(111.3): 71  B-trim: 269 in 2/51
 Lambda= 0.062800
 statistics sampled from 12224 (12272) to 12224 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.377), width:  16
 Scan time:  3.540

The best scores are:                                      opt bits E(32554)
CCDS367.2 SYNC gene_id:81493|Hs108|chr1            ( 482) 3065 292.2 8.2e-79
CCDS53294.1 SYNC gene_id:81493|Hs108|chr1          ( 476) 2886 276.0 6.2e-74


>>CCDS367.2 SYNC gene_id:81493|Hs108|chr1                 (482 aa)
 initn: 3065 init1: 3065 opt: 3065  Z-score: 1528.4  bits: 292.2 E(32554): 8.2e-79
Smith-Waterman score: 3065; 99.6% identity (100.0% similar) in 482 aa overlap (1-482:1-482)

               10        20        30        40        50        60
pF1KE1 MASPEPRRGGDGAAQAARKTRVEANSPLPKNSGSLNEAEALNPEVTLSSEGSLNLEDILY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MASPEPRRGGDGAAQAARKTRVEANSPLPKNSGSLNEAEALNPEVTLSSEGSLNLEDILY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LEDTGDLDETLYVQETEKAEEALYIEEAMQPDEALHVEEPGNPEETVCVEETTEPDRIQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 LEDTGDLDETLYVQETEKAEEALYIEEAMQPDEALHVEEPGNPEETVCVEETTEPDRIQF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VEGPVEPGKPTSPEHVVYEGETVTRAEKSNPEESLRAEQSPSVEENLSIEDLELLEGRFQ
       ::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::
CCDS36 VEGPVEPGKPTSPEHVVYEGETVTRAEKSNPEESLRAEQSPSMEENLSIEDLELLEGRFQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 QCVQAVAQLEEERDQLIHELVLLREPALQEVQQVHQDILAAYKLHAQAELERDGLREEIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 QCVQAVAQLEEERDQLIHELVLLREPALQEVQQVHQDILAAYKLHAQAELERDGLREEIR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 LVKQKLFKVTKECVAYQYQLECRQQDVAQFADFQEVLTTRATQLSEELAQLRDAYQKQKE
       :::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
CCDS36 LVKQKLFKVTKECVAYQYQLECRQQDVAQFADFREVLTTRATQLSEELAQLRDAYQKQKE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 QLRQQLEAPPSQRDGHFLQESRRLSAQFENLMAESRQDLEEEYEPQFLRLLERKEAGTKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 QLRQQLEAPPSQRDGHFLQESRRLSAQFENLMAESRQDLEEEYEPQFLRLLERKEAGTKA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 LQRTQAEIQEMKEALRPLQAEARQLRLQNRNLEDQIALVRQKRDEEVQQYREQLEEMEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 LQRTQAEIQEMKEALRPLQAEARQLRLQNRNLEDQIALVRQKRDEEVQQYREQLEEMEER
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 QRQLRNGVQLQQQKNKEMEQLRLSLAEELSTYKAMLLPKSLEQADAPTSQAGGMETQSQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 QRQLRNGVQLQQQKNKEMEQLRLSLAEELSTYKAMLLPKSLEQADAPTSQAGGMETQSQG
              430       440       450       460       470       480

         
pF1KE1 AV
       ::
CCDS36 AV
         

>>CCDS53294.1 SYNC gene_id:81493|Hs108|chr1               (476 aa)
 initn: 3187 init1: 2886 opt: 2886  Z-score: 1440.8  bits: 276.0 E(32554): 6.2e-74
Smith-Waterman score: 2886; 99.1% identity (99.8% similar) in 456 aa overlap (1-456:1-456)

               10        20        30        40        50        60
pF1KE1 MASPEPRRGGDGAAQAARKTRVEANSPLPKNSGSLNEAEALNPEVTLSSEGSLNLEDILY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MASPEPRRGGDGAAQAARKTRVEANSPLPKNSGSLNEAEALNPEVTLSSEGSLNLEDILY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LEDTGDLDETLYVQETEKAEEALYIEEAMQPDEALHVEEPGNPEETVCVEETTEPDRIQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LEDTGDLDETLYVQETEKAEEALYIEEAMQPDEALHVEEPGNPEETVCVEETTEPDRIQF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VEGPVEPGKPTSPEHVVYEGETVTRAEKSNPEESLRAEQSPSVEENLSIEDLELLEGRFQ
       ::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::
CCDS53 VEGPVEPGKPTSPEHVVYEGETVTRAEKSNPEESLRAEQSPSMEENLSIEDLELLEGRFQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 QCVQAVAQLEEERDQLIHELVLLREPALQEVQQVHQDILAAYKLHAQAELERDGLREEIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QCVQAVAQLEEERDQLIHELVLLREPALQEVQQVHQDILAAYKLHAQAELERDGLREEIR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 LVKQKLFKVTKECVAYQYQLECRQQDVAQFADFQEVLTTRATQLSEELAQLRDAYQKQKE
       :::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
CCDS53 LVKQKLFKVTKECVAYQYQLECRQQDVAQFADFREVLTTRATQLSEELAQLRDAYQKQKE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 QLRQQLEAPPSQRDGHFLQESRRLSAQFENLMAESRQDLEEEYEPQFLRLLERKEAGTKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QLRQQLEAPPSQRDGHFLQESRRLSAQFENLMAESRQDLEEEYEPQFLRLLERKEAGTKA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 LQRTQAEIQEMKEALRPLQAEARQLRLQNRNLEDQIALVRQKRDEEVQQYREQLEEMEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LQRTQAEIQEMKEALRPLQAEARQLRLQNRNLEDQIALVRQKRDEEVQQYREQLEEMEER
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 QRQLRNGVQLQQQKNKEMEQLRLSLAEELSTYKAMLLPKSLEQADAPTSQAGGMETQSQG
       :::::::::::::::::::::::::::::::::. :                        
CCDS53 QRQLRNGVQLQQQKNKEMEQLRLSLAEELSTYKGCLEIYGQICNPETAKNFLAKDH    
              430       440       450       460       470          

         
pF1KE1 AV




482 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 19:24:07 2016 done: Sun Nov  6 19:24:07 2016
 Total Scan time:  3.540 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]