FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1230, 343 aa
  1>>>pF1KE1230 343 - 343 aa - 343 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7435+/-0.000951; mu= 13.3059+/- 0.057
 mean_var=59.6397+/-11.961, 0's: 0 Z-trim(103.9): 13  B-trim: 0 in 0/48
 Lambda= 0.166076
 statistics sampled from 7619 (7623) to 7619 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.608), E-opt: 0.2 (0.234), width:  16
 Scan time:  2.480

The best scores are:                                      opt bits E(32554)
CCDS33069.1 FUT2 gene_id:2524|Hs108|chr19          ( 343) 2362 574.5 4.4e-164
CCDS12733.1 FUT1 gene_id:2523|Hs108|chr19          ( 365) 1413 347.1 1.3e-95


>>CCDS33069.1 FUT2 gene_id:2524|Hs108|chr19               (343 aa)
 initn: 2362 init1: 2362 opt: 2362  Z-score: 3059.2  bits: 574.5 E(32554): 4.4e-164
Smith-Waterman score: 2362; 100.0% identity (100.0% similar) in 343 aa overlap (1-343:1-343)

               10        20        30        40        50        60
pF1KE1 MLVVQMPFSFPMAHFILFVFTVSTIFHVQQRLAKIQAMWELPVQIPVLASTSKALGPSQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MLVVQMPFSFPMAHFILFVFTVSTIFHVQQRLAKIQAMWELPVQIPVLASTSKALGPSQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RGMWTINAIGRLGNQMGEYATLYALAKMNGRPAFIPAQMHSTLAPIFRITLPVLHSATAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RGMWTINAIGRLGNQMGEYATLYALAKMNGRPAFIPAQMHSTLAPIFRITLPVLHSATAS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RIPWQNYHLNDWMEEEYRHIPGEYVRFTGYPCSWTFYHHLRQEILQEFTLHDHVREEAQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RIPWQNYHLNDWMEEEYRHIPGEYVRFTGYPCSWTFYHHLRQEILQEFTLHDHVREEAQK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 FLRGLQVNGSRPGTFVGVHVRRGDYVHVMPKVWKGVVADRRYLQQALDWFRARYSSLIFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FLRGLQVNGSRPGTFVGVHVRRGDYVHVMPKVWKGVVADRRYLQQALDWFRARYSSLIFV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 VTSNGMAWCRENIDTSHGDVVFAGDGIEGSPAKDFALLTQCNHTIMTIGTFGIWAAYLTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VTSNGMAWCRENIDTSHGDVVFAGDGIEGSPAKDFALLTQCNHTIMTIGTFGIWAAYLTG
              250       260       270       280       290       300

              310       320       330       340   
pF1KE1 GDTIYLANYTLPDSPFLKIFKPEAAFLPEWTGIAADLSPLLKH
       :::::::::::::::::::::::::::::::::::::::::::
CCDS33 GDTIYLANYTLPDSPFLKIFKPEAAFLPEWTGIAADLSPLLKH
              310       320       330       340   

>>CCDS12733.1 FUT1 gene_id:2523|Hs108|chr19               (365 aa)
 initn: 1436 init1: 866 opt: 1413  Z-score: 1829.9  bits: 347.1 E(32554): 1.3e-95
Smith-Waterman score: 1413; 67.7% identity (85.4% similar) in 294 aa overlap (49-340:66-359)

       20        30        40        50        60        70        
pF1KE1 VFTVSTIFHVQQRLAKIQAMWELPVQIPVLASTSKALGPSQLRGMWTINAIGRLGNQMGE
                                     ::.:    :..: : ::.   ::.:::::.
CCDS12 LGLSILCPDRRLVTPPVAIFCLPGTAMGPNASSSCPQHPASLSGTWTVYPNGRFGNQMGQ
          40        50        60        70        80        90     

       80        90       100       110       120       130        
pF1KE1 YATLYALAKMNGRPAFIPAQMHSTLAPIFRITLPVLHSATASRIPWQNYHLNDWMEEEYR
       :::: :::..::: :::   ::..:::.::::::::   . :: ::.. .:.::: ::: 
CCDS12 YATLLALAQLNGRRAFILPAMHAALAPVFRITLPVLAPEVDSRTPWRELQLHDWMSEEYA
         100       110       120       130       140       150     

      140       150       160       170       180         190      
pF1KE1 HIPGEYVRFTGYPCSWTFYHHLRQEILQEFTLHDHVREEAQKFLRGLQVN--GSRPGTFV
        .   .....:.::::::.::::..: .:::::::.:::::. :  :...  :.:: :::
CCDS12 DLRDPFLKLSGFPCSWTFFHHLREQIRREFTLHDHLREEAQSVLGQLRLGRTGDRPRTFV
         160       170       180       190       200       210     

        200       210       220       230       240       250      
pF1KE1 GVHVRRGDYVHVMPKVWKGVVADRRYLQQALDWFRARYSSLIFVVTSNGMAWCRENIDTS
       :::::::::..:::. :::::.:  ::.::.::::::. . .:::::::: ::.::::::
CCDS12 GVHVRRGDYLQVMPQRWKGVVGDSAYLRQAMDWFRARHEAPVFVVTSNGMEWCKENIDTS
         220       230       240       250       260       270     

        260       270       280       290       300       310      
pF1KE1 HGDVVFAGDGIEGSPAKDFALLTQCNHTIMTIGTFGIWAAYLTGGDTIYLANYTLPDSPF
       .:::.::::: :..: ::::::::::::::::::::.:::::.::::.::::.::::: :
CCDS12 QGDVTFAGDGQEATPWKDFALLTQCNHTIMTIGTFGFWAAYLAGGDTVYLANFTLPDSEF
         280       290       300       310       320       330     

        320       330       340      
pF1KE1 LKIFKPEAAFLPEWTGIAADLSPLLKH   
       ::::::::::::::.:: ::::::      
CCDS12 LKIFKPEAAFLPEWVGINADLSPLWTLAKP
         340       350       360     




343 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 03:17:38 2016 done: Tue Nov  8 03:17:39 2016
 Total Scan time:  2.480 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]