Result of FASTA (ccds) for
pFN21AE1225
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1225, 287 aa
1>>>pF1KE1225 287 - 287 aa - 287 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0530+/-0.000956; mu= 11.3974+/- 0.057
mean_var=98.2039+/-19.605, 0's: 0 Z-trim(107.8): 113 B-trim: 8 in 2/49
Lambda= 0.129423
statistics sampled from 9676 (9799) to 9676 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.689), E-opt: 0.2 (0.301), width: 16
Scan time: 1.930
The best scores are: opt bits E(32554)
CCDS46201.1 RFPL4A gene_id:342931|Hs108|chr19 ( 287) 1969 378.0 4.3e-105
CCDS59425.1 RFPL4AL1 gene_id:729974|Hs108|chr19 ( 287) 1946 373.7 8.4e-104
CCDS13857.2 RFPL1 gene_id:5988|Hs108|chr22 ( 317) 1166 228.1 6.3e-60
CCDS13904.1 RFPL3 gene_id:10738|Hs108|chr22 ( 288) 1145 224.2 8.9e-59
CCDS43011.1 RFPL3 gene_id:10738|Hs108|chr22 ( 317) 1145 224.2 9.6e-59
CCDS46694.1 RFPL2 gene_id:10739|Hs108|chr22 ( 317) 1104 216.5 1.9e-56
CCDS43009.2 RFPL2 gene_id:10739|Hs108|chr22 ( 378) 1104 216.6 2.2e-56
CCDS4654.1 TRIM27 gene_id:5987|Hs108|chr6 ( 513) 530 109.5 5.2e-24
CCDS34515.1 RFPL4B gene_id:442247|Hs108|chr6 ( 263) 508 105.2 5.3e-23
CCDS44525.1 TRIM21 gene_id:6737|Hs108|chr11 ( 475) 492 102.4 6.7e-22
CCDS31048.1 TRIM11 gene_id:81559|Hs108|chr1 ( 468) 483 100.7 2.1e-21
CCDS4611.1 BTN3A3 gene_id:10384|Hs108|chr6 ( 584) 472 98.7 1e-20
CCDS56405.1 BTN2A1 gene_id:11120|Hs108|chr6 ( 466) 468 97.9 1.5e-20
CCDS4613.1 BTN2A1 gene_id:11120|Hs108|chr6 ( 527) 468 97.9 1.6e-20
CCDS4612.2 BTN3A3 gene_id:10384|Hs108|chr6 ( 535) 467 97.8 1.9e-20
CCDS56403.1 BTN2A2 gene_id:10385|Hs108|chr6 ( 313) 460 96.3 3e-20
CCDS475.1 ERMAP gene_id:114625|Hs108|chr1 ( 475) 461 96.6 3.7e-20
CCDS4607.1 BTN2A2 gene_id:10385|Hs108|chr6 ( 407) 460 96.4 3.7e-20
CCDS4606.1 BTN2A2 gene_id:10385|Hs108|chr6 ( 523) 460 96.4 4.5e-20
CCDS3851.1 TRIML1 gene_id:339976|Hs108|chr4 ( 468) 453 95.1 1e-19
CCDS34378.1 TRIM39 gene_id:56658|Hs108|chr6 ( 488) 453 95.1 1.1e-19
CCDS4614.1 BTN1A1 gene_id:696|Hs108|chr6 ( 526) 453 95.1 1.1e-19
CCDS47388.1 BTN3A1 gene_id:11119|Hs108|chr6 ( 461) 447 94.0 2.2e-19
CCDS4608.1 BTN3A1 gene_id:11119|Hs108|chr6 ( 513) 447 94.0 2.4e-19
CCDS34377.1 TRIM39 gene_id:56658|Hs108|chr6 ( 518) 446 93.8 2.7e-19
CCDS10498.1 MEFV gene_id:4210|Hs108|chr16 ( 781) 447 94.1 3.3e-19
CCDS31356.1 TRIM68 gene_id:55128|Hs108|chr11 ( 485) 436 91.9 9.5e-19
CCDS1636.1 TRIM58 gene_id:25893|Hs108|chr1 ( 486) 418 88.6 9.8e-18
CCDS4568.1 TRIM38 gene_id:10475|Hs108|chr6 ( 465) 412 87.4 2.1e-17
CCDS34654.1 TRIM50 gene_id:135892|Hs108|chr7 ( 487) 365 78.7 9.3e-15
CCDS4460.2 BTNL9 gene_id:153579|Hs108|chr5 ( 535) 362 78.2 1.5e-14
CCDS4463.1 TRIM7 gene_id:81786|Hs108|chr5 ( 303) 358 77.2 1.6e-14
CCDS43414.1 TRIM7 gene_id:81786|Hs108|chr5 ( 329) 358 77.3 1.7e-14
CCDS4462.1 TRIM7 gene_id:81786|Hs108|chr5 ( 511) 358 77.4 2.4e-14
CCDS3808.1 TRIM60 gene_id:166655|Hs108|chr4 ( 471) 357 77.2 2.6e-14
CCDS81297.1 TRIM62 gene_id:55223|Hs108|chr1 ( 354) 343 74.5 1.3e-13
CCDS76745.1 TRIM69 gene_id:140691|Hs108|chr15 ( 263) 341 74.0 1.3e-13
CCDS76746.1 TRIM69 gene_id:140691|Hs108|chr15 ( 279) 341 74.0 1.3e-13
CCDS73719.1 TRIM69 gene_id:140691|Hs108|chr15 ( 296) 341 74.1 1.4e-13
CCDS10114.1 TRIM69 gene_id:140691|Hs108|chr15 ( 341) 341 74.1 1.6e-13
CCDS376.1 TRIM62 gene_id:55223|Hs108|chr1 ( 475) 343 74.6 1.6e-13
CCDS53693.1 TRIM64B gene_id:642446|Hs108|chr11 ( 449) 342 74.4 1.7e-13
CCDS32220.1 TRIM69 gene_id:140691|Hs108|chr15 ( 500) 341 74.2 2.1e-13
CCDS1571.1 TRIM17 gene_id:51127|Hs108|chr1 ( 477) 333 72.7 5.8e-13
CCDS73363.1 TRIM64 gene_id:120146|Hs108|chr11 ( 449) 329 71.9 9.3e-13
CCDS3850.2 TRIML2 gene_id:205860|Hs108|chr4 ( 437) 325 71.2 1.5e-12
CCDS2015.1 TRIM43 gene_id:129868|Hs108|chr2 ( 446) 325 71.2 1.5e-12
CCDS60930.1 TRIM49D1 gene_id:399939|Hs108|chr11 ( 452) 319 70.1 3.4e-12
CCDS73287.1 TRIM64C gene_id:646754|Hs108|chr11 ( 450) 318 69.9 3.9e-12
CCDS47358.1 BTNL3 gene_id:10917|Hs108|chr5 ( 466) 314 69.2 6.6e-12
>>CCDS46201.1 RFPL4A gene_id:342931|Hs108|chr19 (287 aa)
initn: 1969 init1: 1969 opt: 1969 Z-score: 2000.2 bits: 378.0 E(32554): 4.3e-105
Smith-Waterman score: 1969; 100.0% identity (100.0% similar) in 287 aa overlap (1-287:1-287)
10 20 30 40 50 60
pF1KE1 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACCLQCLNSLQKEPDGEGLLCRFCSVVSQKDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACCLQCLNSLQKEPDGEGLLCRFCSVVSQKDD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IKPKYKLRALVSIIKELEPKLKSVLTMNPRMRKFQVDMTFDVDTANNYLIISEDLRSFRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 IKPKYKLRALVSIIKELEPKLKSVLTMNPRMRKFQVDMTFDVDTANNYLIISEDLRSFRS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGTSQVWDVGVCKESVNRQGKIVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGTSQVWDVGVCKESVNRQGKIVL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 SSEHGFLTVGCREGKVFAASTVPMTPLWVSPQLHRVGIFLDVGMRSIAFYNVSDGCHIYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SSEHGFLTVGCREGKVFAASTVPMTPLWVSPQLHRVGIFLDVGMRSIAFYNVSDGCHIYT
190 200 210 220 230 240
250 260 270 280
pF1KE1 FIEIPVCEPWRPFFAHKRGSQDDQSILSICSVINPSAASAPVSSEGK
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FIEIPVCEPWRPFFAHKRGSQDDQSILSICSVINPSAASAPVSSEGK
250 260 270 280
>>CCDS59425.1 RFPL4AL1 gene_id:729974|Hs108|chr19 (287 aa)
initn: 1946 init1: 1946 opt: 1946 Z-score: 1977.0 bits: 373.7 E(32554): 8.4e-104
Smith-Waterman score: 1946; 99.0% identity (99.3% similar) in 287 aa overlap (1-287:1-287)
10 20 30 40 50 60
pF1KE1 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACCLQCLNSLQKEPDGEGLLCRFCSVVSQKDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACCLQCLNSLQKEPDGEGLLCRFCSVVSQKDD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IKPKYKLRALVSIIKELEPKLKSVLTMNPRMRKFQVDMTFDVDTANNYLIISEDLRSFRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 IKPKYKLRALVSIIKELEPKLKSVLTMNPRMRKFQVDMTFDVDTANNYLIISEDLRSFRS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGTSQVWDVGVCKESVNRQGKIVL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
CCDS59 GDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGTSQVWDVGVCKESVNRQGKIEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 SSEHGFLTVGCREGKVFAASTVPMTPLWVSPQLHRVGIFLDVGMRSIAFYNVSDGCHIYT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
CCDS59 SSEHGFLTVGCREGKVFAASTVPMTPLWVSPQLHRVGIFLDVGMRSIAFYNVSDGCHINT
190 200 210 220 230 240
250 260 270 280
pF1KE1 FIEIPVCEPWRPFFAHKRGSQDDQSILSICSVINPSAASAPVSSEGK
::::::::::::::::::::::::::::::::::::.::::::::::
CCDS59 FIEIPVCEPWRPFFAHKRGSQDDQSILSICSVINPSTASAPVSSEGK
250 260 270 280
>>CCDS13857.2 RFPL1 gene_id:5988|Hs108|chr22 (317 aa)
initn: 1166 init1: 1166 opt: 1166 Z-score: 1189.3 bits: 228.1 E(32554): 6.3e-60
Smith-Waterman score: 1166; 58.5% identity (83.3% similar) in 282 aa overlap (1-282:30-311)
10 20 30
pF1KE1 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACC
:: :.. :::: ::. ..:.:: : :
CCDS13 MKRLSLVTTNRLSPHGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVC
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE1 LQCLNSLQKEPDGEGLLCRFCSVVSQKDDIKPKYKLRALVSIIKELEPKLKSVLTMNPRM
..:.::::::: :: ::: ::.::::. :.:...:. :.: :::::::::..: :::::
CCDS13 FKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRM
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE1 RKFQVDMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRH
::::::::.:.:::::.:.::.:::: ::: ..:::.. :::::...:.::.:::: :::
CCDS13 RKFQVDMTLDADTANNFLLISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRH
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE1 YWEVDVGTSQVWDVGVCKESVNRQGKIVLSSEHGFLTVGCREGKVFAASTVPMTPLWVSP
::::::::: ::.:::.:::.:.:.: :..:.:: ::. :.:. ..:::::.: :.:.
CCDS13 YWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDR
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE1 QLHRVGIFLDVGMRSIAFYNVSDGCHIYTFIEIPVCEPWRPFFAHKRGSQDDQSILSICS
.:.:::::::.::....:... : :.::: . . :: . ::: . :.:.::::
CCDS13 KLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPPNGDKSVLSICP
250 260 270 280 290 300
280
pF1KE1 VINPSAASAPVSSEGK
::::....:::
CCDS13 VINPGTTDAPVHPGEAK
310
>>CCDS13904.1 RFPL3 gene_id:10738|Hs108|chr22 (288 aa)
initn: 1145 init1: 1145 opt: 1145 Z-score: 1168.7 bits: 224.2 E(32554): 8.9e-59
Smith-Waterman score: 1145; 57.8% identity (82.6% similar) in 282 aa overlap (1-282:1-282)
10 20 30 40 50 60
pF1KE1 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACCLQCLNSLQKEPDGEGLLCRFCSVVSQKDD
:: :.. :::: ::. ..:.:: . ::.:.::::::: :: ::: ::.:::..
CCDS13 MAALFQEASSCPVCSDYLEKPMSLECGCTVCLKCINSLQKEPHGEDLLCCCCSMVSQRNK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IKPKYKLRALVSIIKELEPKLKSVLTMNPRMRKFQVDMTFDVDTANNYLIISEDLRSFRS
:.:. .:. ::: :::::::::..: :::::::::::::.:.:::::.:.::.:::: ::
CCDS13 IRPNRQLERLVSHIKELEPKLKKILQMNPRMRKFQVDMTLDADTANNFLLISDDLRSVRS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGTSQVWDVGVCKESVNRQGKIVL
: ..:::.. :::::...:.::.:::: :::::::::::: ::.:::.:::. .::: :
CCDS13 GLITQNRQDLAERFDVSVCILGSPRFTCGRHYWEVDVGTSTEWDLGVCRESVHCKGKIQL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 SSEHGFLTVGCREGKVFAASTVPMTPLWVSPQLHRVGIFLDVGMRSIAFYNVSDGCHIYT
..: :: ::. :.:. ..:::::.: : :. .:.:::::::.::....:... .: :.::
CCDS13 TTELGFWTVSLRDGSRLSASTVPLTFLLVDRKLQRVGIFLDMGMQNVSFFDAESGSHVYT
190 200 210 220 230 240
250 260 270 280
pF1KE1 FIEIPVCEPWRPFFAHKRGSQDDQSILSICSVINPSAASAPVSSEGK
: . . :: :::.: . . ::..:::: ..: ....:::
CCDS13 FRSVSAEEPLRPFLAPSIPPNGDQGVLSICPLMNSGTTDAPVRPGEAK
250 260 270 280
>>CCDS43011.1 RFPL3 gene_id:10738|Hs108|chr22 (317 aa)
initn: 1145 init1: 1145 opt: 1145 Z-score: 1168.1 bits: 224.2 E(32554): 9.6e-59
Smith-Waterman score: 1145; 57.8% identity (82.6% similar) in 282 aa overlap (1-282:30-311)
10 20 30
pF1KE1 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACC
:: :.. :::: ::. ..:.:: . :
CCDS43 MKRLSLVTTNRLSPQGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCTVC
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE1 LQCLNSLQKEPDGEGLLCRFCSVVSQKDDIKPKYKLRALVSIIKELEPKLKSVLTMNPRM
:.:.::::::: :: ::: ::.:::.. :.:. .:. ::: :::::::::..: :::::
CCDS43 LKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMNPRM
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE1 RKFQVDMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRH
::::::::.:.:::::.:.::.:::: ::: ..:::.. :::::...:.::.:::: :::
CCDS43 RKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTCGRH
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE1 YWEVDVGTSQVWDVGVCKESVNRQGKIVLSSEHGFLTVGCREGKVFAASTVPMTPLWVSP
::::::::: ::.:::.:::. .::: :..: :: ::. :.:. ..:::::.: : :.
CCDS43 YWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLLVDR
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE1 QLHRVGIFLDVGMRSIAFYNVSDGCHIYTFIEIPVCEPWRPFFAHKRGSQDDQSILSICS
.:.:::::::.::....:... .: :.::: . . :: :::.: . . ::..::::
CCDS43 KLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLSICP
250 260 270 280 290 300
280
pF1KE1 VINPSAASAPVSSEGK
..: ....:::
CCDS43 LMNSGTTDAPVRPGEAK
310
>>CCDS46694.1 RFPL2 gene_id:10739|Hs108|chr22 (317 aa)
initn: 1104 init1: 1104 opt: 1104 Z-score: 1126.7 bits: 216.5 E(32554): 1.9e-56
Smith-Waterman score: 1104; 56.0% identity (81.6% similar) in 282 aa overlap (1-282:30-311)
10 20 30
pF1KE1 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACC
:: :.. :::: ::. ..:.:: : :
CCDS46 MKRLSLVTTNRLSPHGNFFTLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVC
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE1 LQCLNSLQKEPDGEGLLCRFCSVVSQKDDIKPKYKLRALVSIIKELEPKLKSVLTMNPRM
:.:.::::::: :: ::: :.::.:. :. . .:. :.: :::::::::..: :::::
CCDS46 LKCINSLQKEPHGEDLLCCCSSMVSRKNKIRRNRQLERLASHIKELEPKLKKILQMNPRM
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE1 RKFQVDMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRH
::::::::.:..::::.:.::.:::: ::: . :::.. :::::...:.::.:::: :::
CCDS46 RKFQVDMTLDANTANNFLLISDDLRSVRSGRIRQNRQDLAERFDVSVCILGSPRFTCGRH
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE1 YWEVDVGTSQVWDVGVCKESVNRQGKIVLSSEHGFLTVGCREGKVFAASTVPMTPLWVSP
:::::::: ::.:::.:::.:.:.: :..: :: ::. :.: ..:.:::.: :.:.
CCDS46 CWEVDVGTSTEWDLGVCRESVHRKGRIQLTTELGFWTVSLRDGGRLSATTVPLTFLFVDR
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE1 QLHRVGIFLDVGMRSIAFYNVSDGCHIYTFIEIPVCEPWRPFFAHKRGSQDDQSILSICS
.:.:::::::.::....:... .: :.::: . . :: :::.: . . ::..::::
CCDS46 KLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSVPPNGDQGVLSICP
250 260 270 280 290 300
280
pF1KE1 VINPSAASAPVSSEGK
..: ....:::
CCDS46 LMNSGTTDAPVRPGEAK
310
>>CCDS43009.2 RFPL2 gene_id:10739|Hs108|chr22 (378 aa)
initn: 1104 init1: 1104 opt: 1104 Z-score: 1125.7 bits: 216.6 E(32554): 2.2e-56
Smith-Waterman score: 1104; 56.0% identity (81.6% similar) in 282 aa overlap (1-282:91-372)
10 20 30
pF1KE1 MAEHFKQIIRCPVCLKDLEEAVQLKCGYAC
:: :.. :::: ::. ..:.:: :
CCDS43 KRPSCAPSPQDLSAQWKQLEDRGASSRRVDMAALFQEASSCPVCSDYLEKPMSLECGCAV
70 80 90 100 110 120
40 50 60 70 80 90
pF1KE1 CLQCLNSLQKEPDGEGLLCRFCSVVSQKDDIKPKYKLRALVSIIKELEPKLKSVLTMNPR
::.:.::::::: :: ::: :.::.:. :. . .:. :.: :::::::::..: ::::
CCDS43 CLKCINSLQKEPHGEDLLCCCSSMVSRKNKIRRNRQLERLASHIKELEPKLKKILQMNPR
130 140 150 160 170 180
100 110 120 130 140 150
pF1KE1 MRKFQVDMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGR
:::::::::.:..::::.:.::.:::: ::: . :::.. :::::...:.::.:::: ::
CCDS43 MRKFQVDMTLDANTANNFLLISDDLRSVRSGRIRQNRQDLAERFDVSVCILGSPRFTCGR
190 200 210 220 230 240
160 170 180 190 200 210
pF1KE1 HYWEVDVGTSQVWDVGVCKESVNRQGKIVLSSEHGFLTVGCREGKVFAASTVPMTPLWVS
: :::::::: ::.:::.:::.:.:.: :..: :: ::. :.: ..:.:::.: :.:.
CCDS43 HCWEVDVGTSTEWDLGVCRESVHRKGRIQLTTELGFWTVSLRDGGRLSATTVPLTFLFVD
250 260 270 280 290 300
220 230 240 250 260 270
pF1KE1 PQLHRVGIFLDVGMRSIAFYNVSDGCHIYTFIEIPVCEPWRPFFAHKRGSQDDQSILSIC
.:.:::::::.::....:... .: :.::: . . :: :::.: . . ::..::::
CCDS43 RKLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSVPPNGDQGVLSIC
310 320 330 340 350 360
280
pF1KE1 SVINPSAASAPVSSEGK
..: ....:::
CCDS43 PLMNSGTTDAPVRPGEAK
370
>>CCDS4654.1 TRIM27 gene_id:5987|Hs108|chr6 (513 aa)
initn: 611 init1: 509 opt: 530 Z-score: 544.6 bits: 109.5 E(32554): 5.2e-24
Smith-Waterman score: 530; 38.6% identity (66.4% similar) in 220 aa overlap (70-286:287-506)
40 50 60 70 80 90
pF1KE1 KEPDGEGLLCRFCSVVSQKDDIKPKYKLRALVSIIKELEPKLKSVLTMNPRMRKFQ---V
:. .:.. :..: . ..:. : :
CCDS46 RAERIRIPEPWITPPDLQEKIHIFAQKCLFLTESLKQFTEKMQSDMEKIQELREAQLYSV
260 270 280 290 300 310
100 110 120 130 140 150
pF1KE1 DMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVD
:.:.: ::: ::.:..::. : . :.:. .. :::. ::::.: : .:::::::.
CCDS46 DVTLDPDTAYPSLILSDNLRQVRYSYLQQDLPDNPERFNLFPCVLGSPCFIAGRHYWEVE
320 330 340 350 360 370
160 170 180 190 200 210
pF1KE1 VGTSQVWDVGVCKESVNRQGKIVLSSEHGFLTVGCREGKVFAASTVPMTPLWVSPQLHRV
:: . : .:::..:: :.: .. . ..:: .:. :: . : : ::: : . :.::
CCDS46 VGDKAKWTIGVCEDSVCRKGGVTSAPQNGFWAVSLWYGKEYWALTSPMTALPLRTPLQRV
380 390 400 410 420 430
220 230 240 250 260 270
pF1KE1 GIFLDVGMRSIAFYNVSDGCHIYTFIEIPVCEPWRPFFAHKRGSQDDQSILSICSVINPS
::::: ..::::.. :: .:: . : : ::.:. . .. . . : :: . . .
CCDS46 GIFLDYDAGEVSFYNVTERCHTFTFSHATFCGPVRPYFSLSYSGGKSAAPLIICPMSGID
440 450 460 470 480 490
280
pF1KE1 AASAPVSSEGK
. :. :...:
CCDS46 GFSGHVGNHGHSMETSP
500 510
>>CCDS34515.1 RFPL4B gene_id:442247|Hs108|chr6 (263 aa)
initn: 442 init1: 186 opt: 508 Z-score: 526.4 bits: 105.2 E(32554): 5.3e-23
Smith-Waterman score: 508; 32.4% identity (64.7% similar) in 272 aa overlap (1-270:1-262)
10 20 30 40 50 60
pF1KE1 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACCLQCLNSLQKEPDGEGLLCRFCSVVSQKDD
::.... . ::::: . ...:.: .. :..:.. : .: .: : .
CCDS34 MAKRLQAELSCPVCLDFFSCSISLSCTHVFCFDCIQRYILENHDFRAMCPLCRDVVKVPA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IKPKYKLRALVSIIKELEPKLKSVLTMNPRMRKFQVDMTFDVDTANNYLIISEDLRSFRS
.. .... .:. . :. . .:.. : . ..:.:. :.:.:. ::.. :..:.:::: .
CCDS34 LE-EWQVSVLTLMTKQHNSRLEQSLHVREELRHFREDVTLDAATASSLLVFSNDLRSAQC
70 80 90 100 110
130 140 150 160 170
pF1KE1 GDLSQNRKEQAERFDTAL-CVLGTPRFTSGRHYWEVDVGTSQVWDVGVCKESVNRQGKIV
. .. . : : :::::: :.::.:::::.:: . :..::::: ..:... .
CCDS34 KKIHHDLTK-----DPRLACVLGTPCFSSGQHYWEVEVGEVKSWSLGVCKEPADRKSNDL
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 LSSEHGFLTVGCREGKVFAASTVPMTPLWVSPQLHRVGIFLDVGMRSIAFYNVSDGCHIY
. :::: .. . : . : . . : .::.:.:::::::. .. : :..:... ::
CCDS34 FP-EHGFW-ISMKAGAIHANTHLERIP--ASPRLRRVGIFLDADLEEIQFFDVDNNVLIY
180 190 200 210 220 230
240 250 260 270 280
pF1KE1 TFIEIPVCEPWRPFFAHKR-GSQDDQSILSICSVINPSAASAPVSSEGK
: . : ::: . : .. ..:.::
CCDS34 THDGFFSLELLCPFFCLELLGEGESGNVLTICP
240 250 260
>>CCDS44525.1 TRIM21 gene_id:6737|Hs108|chr11 (475 aa)
initn: 554 init1: 404 opt: 492 Z-score: 506.7 bits: 102.4 E(32554): 6.7e-22
Smith-Waterman score: 492; 40.7% identity (65.3% similar) in 216 aa overlap (74-279:259-472)
50 60 70 80 90
pF1KE1 GEGLLCRFCSVVSQKDDIKPKYKLRALVSIIKELE---PKLKSVLT---MNPRMRKFQVD
.:.:. :.:.:: .. .: :
CCDS44 ISELDRRCHSSALELLQEVIIVLERSESWNLKDLDITSPELRSVCHVPGLKKMLRTCAVH
230 240 250 260 270 280
100 110 120 130 140 150
pF1KE1 MTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDV
.:.: :::: .::.::: :. : :: .:. . ::::. :::. .: ::.:::::::
CCDS44 ITLDPDTANPWLILSEDRRQVRLGDTQQSIPGNEERFDSYPMVLGAQHFHSGKHYWEVDV
290 300 310 320 330 340
160 170 180 190 200 210
pF1KE1 GTSQVWDVGVCKESVNRQGKIVLSSEHGFLTVGCREGKVFAASTVPMTPLWVSPQLHRVG
...::.:::..:: :.:...:::. :: :. . . . :.: :.::: .. .::
CCDS44 TGKEAWDLGVCRDSVRRKGHFLLSSKSGFWTIWLWNKQKYEAGTYPQTPLHLQVPPCQVG
350 360 370 380 390 400
220 230 240 250 260 270
pF1KE1 IFLDVGMRSIAFYNVSD-GCHIYTFIEIPVCEPWRPFFAHKRGSQD---DQSILSICSVI
:::: ..:::..: : ::.: : : ::::. : .: . . :..: .
CCDS44 IFLDYEAGMVSFYNITDHGSLIYSFSECAFTGPLRPFFSP--GFNDGGKNTAPLTLCPLN
410 420 430 440 450 460
280
pF1KE1 NPSAASAPVSSEGK
: .:
CCDS44 IGSQGSTDY
470
287 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 10:34:19 2016 done: Sun Nov 6 10:34:19 2016
Total Scan time: 1.930 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]