Result of FASTA (ccds) for
pFN21AE1219
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1219, 223 aa
1>>>pF1KE1219 223 - 223 aa - 223 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2888+/-0.000799; mu= 14.2846+/- 0.048
mean_var=70.4824+/-14.678, 0's: 0 Z-trim(108.1): 30 B-trim: 342 in 1/49
Lambda= 0.152769
statistics sampled from 9955 (9981) to 9955 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.307), width: 16
Scan time: 2.280
The best scores are: opt bits E(32554)
CCDS73825.1 TMEM114 gene_id:283953|Hs108|chr16 ( 223) 1426 323.0 9.6e-89
CCDS76819.1 TMEM114 gene_id:283953|Hs108|chr16 ( 142) 880 202.5 1.1e-52
CCDS76820.1 TMEM114 gene_id:283953|Hs108|chr16 ( 177) 683 159.2 1.6e-39
CCDS56046.1 TMEM235 gene_id:283999|Hs108|chr17 ( 223) 472 112.7 1.9e-25
CCDS56047.1 TMEM235 gene_id:283999|Hs108|chr17 ( 196) 315 78.1 4.5e-15
>>CCDS73825.1 TMEM114 gene_id:283953|Hs108|chr16 (223 aa)
initn: 1426 init1: 1426 opt: 1426 Z-score: 1706.7 bits: 323.0 E(32554): 9.6e-89
Smith-Waterman score: 1426; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:1-223)
10 20 30 40 50 60
pF1KE1 MRVHLGGLAGAAALTGALSFVLLAAAIGTDFWYIIDTERLERTGPGAQDLLGSINRSQPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MRVHLGGLAGAAALTGALSFVLLAAAIGTDFWYIIDTERLERTGPGAQDLLGSINRSQPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PLSSHSGLWRTCRVQSPCTPLMNPFRLENVTVSESSRQLLTMHGTFVILLPLSLILMVFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PLSSHSGLWRTCRVQSPCTPLMNPFRLENVTVSESSRQLLTMHGTFVILLPLSLILMVFG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 GMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQ
130 140 150 160 170 180
190 200 210 220
pF1KE1 VDISFGWSLALGWISFIAELLTGAAFLAAARELSLRRRQDQAI
:::::::::::::::::::::::::::::::::::::::::::
CCDS73 VDISFGWSLALGWISFIAELLTGAAFLAAARELSLRRRQDQAI
190 200 210 220
>>CCDS76819.1 TMEM114 gene_id:283953|Hs108|chr16 (142 aa)
initn: 880 init1: 880 opt: 880 Z-score: 1059.2 bits: 202.5 E(32554): 1.1e-52
Smith-Waterman score: 880; 100.0% identity (100.0% similar) in 142 aa overlap (82-223:1-142)
60 70 80 90 100 110
pF1KE1 GSINRSQPEPLSSHSGLWRTCRVQSPCTPLMNPFRLENVTVSESSRQLLTMHGTFVILLP
::::::::::::::::::::::::::::::
CCDS76 MNPFRLENVTVSESSRQLLTMHGTFVILLP
10 20 30
120 130 140 150 160 170
pF1KE1 LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCL
40 50 60 70 80 90
180 190 200 210 220
pF1KE1 LEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAARELSLRRRQDQAI
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAARELSLRRRQDQAI
100 110 120 130 140
>>CCDS76820.1 TMEM114 gene_id:283953|Hs108|chr16 (177 aa)
initn: 696 init1: 675 opt: 683 Z-score: 823.1 bits: 159.2 E(32554): 1.6e-39
Smith-Waterman score: 1037; 79.4% identity (79.4% similar) in 223 aa overlap (1-223:1-177)
10 20 30 40 50 60
pF1KE1 MRVHLGGLAGAAALTGALSFVLLAAAIGTDFWYIIDTERLERTGPGAQDLLGSINRSQPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MRVHLGGLAGAAALTGALSFVLLAAAIGTDFWYIIDTERLERTGPGAQDLLGSINRSQPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PLSSHSGLWRTCRVQSPCTPLMNPFRLENVTVSESSRQLLTMHGTFVILLPLSLILMVFG
::::::::::::::::::::::::::::::::::::::::::
CCDS76 PLSSHSGLWRTCRVQSPCTPLMNPFRLENVTVSESSRQLLTM------------------
70 80 90 100
130 140 150 160 170 180
pF1KE1 GMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQ
::::::::::::::::::::::::::::::::
CCDS76 ----------------------------VTLAGISVYIAYSAAAFREALCLLEEKALLDQ
110 120 130
190 200 210 220
pF1KE1 VDISFGWSLALGWISFIAELLTGAAFLAAARELSLRRRQDQAI
:::::::::::::::::::::::::::::::::::::::::::
CCDS76 VDISFGWSLALGWISFIAELLTGAAFLAAARELSLRRRQDQAI
140 150 160 170
>>CCDS56046.1 TMEM235 gene_id:283999|Hs108|chr17 (223 aa)
initn: 583 init1: 376 opt: 472 Z-score: 570.4 bits: 112.7 E(32554): 1.9e-25
Smith-Waterman score: 560; 46.4% identity (70.1% similar) in 211 aa overlap (5-215:4-204)
10 20 30 40 50 60
pF1KE1 MRVHLGGLAGAAALTGALSFVLLAAAIGTDFWYIIDTERLERTGPGAQDLLGSINRSQPE
::.: :::: . :::.:::::...:.::: :: . : :: .. :
CCDS56 MARLGALLLAAALGALLSFALLAAAVASDYWYI-----LEVADAGN----GSAWPGRAE
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 PLSSHSGLWRTCRVQSPCTPLMNPFRLENVTVSESSRQLLTMHGTFVILLPLSLILMVFG
::::::::: :. :. : ::..:: :.. :: : ..:. .: . ...:::::.:.: :
CCDS56 LLSSHSGLWRICEGQNGCIPLVDPFASESLDVSTSVQHLILLHRAVIVVLPLSLVLLVCG
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 GMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQ
. :.:: : :. :::.:: ::.:...::::.:.::.:: :: :.. . . .
CCDS56 WICGLLSSLAQSVSLLLFTGCYFLLGSVLTLAGVSIYISYSHLAFAETVQQYGPQHM-QG
120 130 140 150 160
190 200 210 220
pF1KE1 VDISFGWSLALGWISFIAELLTGAAFLAAARELSLRRRQDQAI
: .:::::.::.: : : ..:. .:.:: :::
CCDS56 VRVSFGWSMALAWGSCALEAFSGTLLLSAAWTLSLSPPICGHLSPQQVGGRGGD
170 180 190 200 210 220
>>CCDS56047.1 TMEM235 gene_id:283999|Hs108|chr17 (196 aa)
initn: 445 init1: 220 opt: 315 Z-score: 384.2 bits: 78.1 E(32554): 4.5e-15
Smith-Waterman score: 429; 41.7% identity (61.6% similar) in 211 aa overlap (5-215:4-177)
10 20 30 40 50 60
pF1KE1 MRVHLGGLAGAAALTGALSFVLLAAAIGTDFWYIIDTERLERTGPGAQDLLGSINRSQPE
::.: :::: . :::.:::::...:.::: :: . : :: .. :
CCDS56 MARLGALLLAAALGALLSFALLAAAVASDYWYI-----LEVADAGN----GSAWPGRAE
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 PLSSHSGLWRTCRVQSPCTPLMNPFRLENVTVSESSRQLLTMHGTFVILLPLSLILMVFG
::::::::: :.: .: . ...:::::.:.: :
CCDS56 LLSSHSGLWRICEV---------------------------LHRAVIVVLPLSLVLLVCG
60 70 80
130 140 150 160 170 180
pF1KE1 GMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQ
. :.:: : :. :::.:: ::.:...::::.:.::.:: :: :.. . . .
CCDS56 WICGLLSSLAQSVSLLLFTGCYFLLGSVLTLAGVSIYISYSHLAFAETVQQYGPQHM-QG
90 100 110 120 130 140
190 200 210 220
pF1KE1 VDISFGWSLALGWISFIAELLTGAAFLAAARELSLRRRQDQAI
: .:::::.::.: : : ..:. .:.:: :::
CCDS56 VRVSFGWSMALAWGSCALEAFSGTLLLSAAWTLSLSPPICGHLSPQQVGGRGGD
150 160 170 180 190
223 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 21:34:51 2016 done: Sun Nov 6 21:34:51 2016
Total Scan time: 2.280 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]