FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1211, 132 aa
  1>>>pF1KE1211 132 - 132 aa - 132 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9757+/-0.000852; mu= 12.5057+/- 0.051
 mean_var=58.1826+/-11.425, 0's: 0 Z-trim(106.6): 35  B-trim: 0 in 0/47
 Lambda= 0.168143
 statistics sampled from 9030 (9060) to 9030 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.278), width:  16
 Scan time:  1.380

The best scores are:                                      opt bits E(32554)
CCDS46135.1 BSPH1 gene_id:100131137|Hs108|chr19    ( 132)  963 241.4 1.2e-64
CCDS12708.1 ELSPBP1 gene_id:64100|Hs108|chr19      ( 223)  335 89.2 1.3e-18


>>CCDS46135.1 BSPH1 gene_id:100131137|Hs108|chr19         (132 aa)
 initn: 963 init1: 963 opt: 963  Z-score: 1274.2  bits: 241.4 E(32554): 1.2e-64
Smith-Waterman score: 963; 99.2% identity (99.2% similar) in 132 aa overlap (1-132:1-132)

               10        20        30        40        50        60
pF1KE1 MGSLMLLFVETMRNSSACIFPVILNELSSTVETITHFPEVTDGECVFPFHYKNGTYYDCI
       ::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MGSLMLLFVETTRNSSACIFPVILNELSSTVETITHFPEVTDGECVFPFHYKNGTYYDCI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KSKARHKWCSLNKTYEGYWKFCSAEDFANCVFPFWYRRLIYWECTDDGEAFGKKWCSLTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KSKARHKWCSLNKTYEGYWKFCSAEDFANCVFPFWYRRLIYWECTDDGEAFGKKWCSLTK
               70        80        90       100       110       120

              130  
pF1KE1 NFNKDRIWKYCE
       ::::::::::::
CCDS46 NFNKDRIWKYCE
              130  

>>CCDS12708.1 ELSPBP1 gene_id:64100|Hs108|chr19           (223 aa)
 initn: 335 init1: 335 opt: 335  Z-score: 447.5  bits: 89.2 E(32554): 1.3e-18
Smith-Waterman score: 335; 42.7% identity (70.8% similar) in 89 aa overlap (44-132:28-116)

            20        30        40        50        60        70   
pF1KE1 NSSACIFPVILNELSSTVETITHFPEVTDGECVFPFHYKNGTYYDCIKSKARHKWCSLNK
                                     :::::: ::...:. : . ..   ::.   
CCDS12    MTRWSSYLLGWTTFLLYSYESSGGMHEECVFPFTYKGSVYFTCTHIHSLSPWCATRA
                  10        20        30        40        50       

            80        90       100       110       120       130   
pF1KE1 TYEGYWKFCSAEDFANCVFPFWYRRLIYWECTDDGEAFGKKWCSLTKNFNKDRIWKYCE 
       .:.: ::.:..::.  :.::: ::   :  : ..:  .:. :::.:. :.. . ::.:: 
CCDS12 VYNGQWKYCQSEDYPRCIFPFIYRGKAYNSCISQGSFLGSLWCSVTSVFDEKQQWKFCET
        60        70        80        90       100       110       

CCDS12 NEYGGNSLRKPCIFPSIYRNNVVSDCMEDESNKLWCPTTENMDKDGKWSFCADTRISALV
       120       130       140       150       160       170       




132 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 10:34:49 2016 done: Sun Nov  6 10:34:49 2016
 Total Scan time:  1.380 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]