FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1204, 115 aa
  1>>>pF1KE1204 115 - 115 aa - 115 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2721+/-0.000582; mu= 10.2001+/- 0.035
 mean_var=54.9353+/-10.892, 0's: 0 Z-trim(111.0): 10  B-trim: 54 in 1/49
 Lambda= 0.173041
 statistics sampled from 12055 (12064) to 12055 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.371), width:  16
 Scan time:  1.600

The best scores are:                                      opt bits E(32554)
CCDS53400.1 TSTD1 gene_id:100131187|Hs108|chr1     ( 115)  739 191.7 8.7e-50
CCDS44258.1 TSTD1 gene_id:100131187|Hs108|chr1     ( 109)  630 164.4 1.3e-41
CCDS44257.1 TSTD1 gene_id:100131187|Hs108|chr1     (  74)  464 122.9 2.7e-29


>>CCDS53400.1 TSTD1 gene_id:100131187|Hs108|chr1          (115 aa)
 initn: 739 init1: 739 opt: 739  Z-score: 1007.3  bits: 191.7 E(32554): 8.7e-50
Smith-Waterman score: 739; 100.0% identity (100.0% similar) in 115 aa overlap (1-115:1-115)

               10        20        30        40        50        60
pF1KE1 MAGAPTVSLPELRSLLASGRARLFDVRSREEAAAGTIPGALNIPVSELESALQMEPAAFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MAGAPTVSLPELRSLLASGRARLFDVRSREEAAAGTIPGALNIPVSELESALQMEPAAFQ
               10        20        30        40        50        60

               70        80        90       100       110     
pF1KE1 ALYSAEKPKLEDEHLVFFCQMGKRGLQATQLARSLGYTGARNYAGAYREWLEKES
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ALYSAEKPKLEDEHLVFFCQMGKRGLQATQLARSLGYTGARNYAGAYREWLEKES
               70        80        90       100       110     

>>CCDS44258.1 TSTD1 gene_id:100131187|Hs108|chr1          (109 aa)
 initn: 630 init1: 630 opt: 630  Z-score: 860.6  bits: 164.4 E(32554): 1.3e-41
Smith-Waterman score: 630; 100.0% identity (100.0% similar) in 99 aa overlap (1-99:1-99)

               10        20        30        40        50        60
pF1KE1 MAGAPTVSLPELRSLLASGRARLFDVRSREEAAAGTIPGALNIPVSELESALQMEPAAFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MAGAPTVSLPELRSLLASGRARLFDVRSREEAAAGTIPGALNIPVSELESALQMEPAAFQ
               10        20        30        40        50        60

               70        80        90       100       110     
pF1KE1 ALYSAEKPKLEDEHLVFFCQMGKRGLQATQLARSLGYTGARNYAGAYREWLEKES
       :::::::::::::::::::::::::::::::::::::::                
CCDS44 ALYSAEKPKLEDEHLVFFCQMGKRGLQATQLARSLGYTGYGEVWLLAGR      
               70        80        90       100               

>>CCDS44257.1 TSTD1 gene_id:100131187|Hs108|chr1          (74 aa)
 initn: 464 init1: 464 opt: 464  Z-score: 639.4  bits: 122.9 E(32554): 2.7e-29
Smith-Waterman score: 464; 100.0% identity (100.0% similar) in 71 aa overlap (45-115:4-74)

           20        30        40        50        60        70    
pF1KE1 LLASGRARLFDVRSREEAAAGTIPGALNIPVSELESALQMEPAAFQALYSAEKPKLEDEH
                                     ::::::::::::::::::::::::::::::
CCDS44                            MAGVSELESALQMEPAAFQALYSAEKPKLEDEH
                                          10        20        30   

           80        90       100       110     
pF1KE1 LVFFCQMGKRGLQATQLARSLGYTGARNYAGAYREWLEKES
       :::::::::::::::::::::::::::::::::::::::::
CCDS44 LVFFCQMGKRGLQATQLARSLGYTGARNYAGAYREWLEKES
            40        50        60        70    




115 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:36:01 2016 done: Sun Nov  6 21:36:01 2016
 Total Scan time:  1.600 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]