FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1195, 828 aa
  1>>>pF1KE1195 828 - 828 aa - 828 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5241+/-0.000966; mu= 14.9493+/- 0.058
 mean_var=92.4895+/-18.109, 0's: 0 Z-trim(105.8): 59  B-trim: 0 in 0/53
 Lambda= 0.133361
 statistics sampled from 8556 (8609) to 8556 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.264), width:  16
 Scan time:  3.380

The best scores are:                                      opt bits E(32554)
CCDS41343.1 MYSM1 gene_id:114803|Hs108|chr1        ( 828) 5545 1077.7       0
CCDS74261.1 MPND gene_id:84954|Hs108|chr19         ( 501)  361 80.2 9.8e-15
CCDS42470.1 MPND gene_id:84954|Hs108|chr19         ( 471)  347 77.5   6e-14


>>CCDS41343.1 MYSM1 gene_id:114803|Hs108|chr1             (828 aa)
 initn: 5545 init1: 5545 opt: 5545  Z-score: 5765.0  bits: 1077.7 E(32554):    0
Smith-Waterman score: 5545; 99.9% identity (100.0% similar) in 828 aa overlap (1-828:1-828)

               10        20        30        40        50        60
pF1KE1 MAAEEADVDIEGDVVAAAGAQPGSGENTASVLQKDHYLDSSWRTENGLIPWTLDNTISEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MAAEEADVDIEGDVVAAAGAQPGSGENTASVLQKDHYLDSSWRTENGLIPWTLDNTISEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 NRAVIEKMLLEEEYYLSKKSQPEKVWLDQKEDDKKYMKSLQKTAKIMVHSPTKPASYSVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NRAVIEKMLLEEEYYLSKKSQPEKVWLDQKEDDKKYMKSLQKTAKIMVHSPTKPASYSVK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQKT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 GHNLQVKNEDKGTKAWTPSCLRGRADPNLNAVKIEKLSDDEEVDITDEVDELSSQTPQKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GHNLQVKNEDKGTKAWTPSCLRGRADPNLNAVKIEKLSDDEEVDITDEVDELSSQTPQKN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 SSSDLLLDFPNSKMHETNQGEFIASDSQEALFSKSSRGCLQNEKQDETLSSSEITLWTEK
       :::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS41 SSSDLLLDFPNSKMHETNQGEFITSDSQEALFSKSSRGCLQNEKQDETLSSSEITLWTEK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 QSNGDKKSIELNDQKFNELIKNCNKHDGRGIIVDARQLPSPEPCEIQKNLNDNEMLFHSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QSNGDKKSIELNDQKFNELIKNCNKHDGRGIIVDARQLPSPEPCEIQKNLNDNEMLFHSC
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 QMVEESHEEEELKPPEQEIEIDRNIIQEEEKQAIPEFFEGRQAKTPERYLKIRNYILDQW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QMVEESHEEEELKPPEQEIEIDRNIIQEEEKQAIPEFFEGRQAKTPERYLKIRNYILDQW
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 EICKPKYLNKTSVRPGLKNCGDVNCIGRIHTYLELIGAINFGCEQAVYNRPQTVDKVRIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EICKPKYLNKTSVRPGLKNCGDVNCIGRIHTYLELIGAINFGCEQAVYNRPQTVDKVRIR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 DRKDAVEAYQLAQRLQSMRTRRRRVRDPWGNWCDAKDLEGQTFEHLSAEELAKRREEEKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DRKDAVEAYQLAQRLQSMRTRRRRVRDPWGNWCDAKDLEGQTFEHLSAEELAKRREEEKG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE1 RPVKSLKVPRPTKSSFDPFQLIPCNFFSEEKQEPFQVKVASEALLIMDLHAHVSMAEVIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RPVKSLKVPRPTKSSFDPFQLIPCNFFSEEKQEPFQVKVASEALLIMDLHAHVSMAEVIG
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE1 LLGGRYSEVDKVVEVCAAEPCNSLSTGLQCEMDPVSQTQASETLAVRGFSVIGWYHSHPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LLGGRYSEVDKVVEVCAAEPCNSLSTGLQCEMDPVSQTQASETLAVRGFSVIGWYHSHPA
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE1 FDPNPSLRDIDTQAKYQSYFSRGGAKFIGMIVSPYNRNNPLPYSQITCLVISEEISPDGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FDPNPSLRDIDTQAKYQSYFSRGGAKFIGMIVSPYNRNNPLPYSQITCLVISEEISPDGS
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE1 YRLPYKFEVQQMLEEPQWGLVFEKTRWIIEKYRLSHSSVPMDKIFRRDSDLTCLQKLLEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 YRLPYKFEVQQMLEEPQWGLVFEKTRWIIEKYRLSHSSVPMDKIFRRDSDLTCLQKLLEC
              730       740       750       760       770       780

              790       800       810       820        
pF1KE1 MRKTLSKVTNCFMAEEFLTEIENLFLSNYKSNQENGVTEENCTKELLM
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MRKTLSKVTNCFMAEEFLTEIENLFLSNYKSNQENGVTEENCTKELLM
              790       800       810       820        

>>CCDS74261.1 MPND gene_id:84954|Hs108|chr19              (501 aa)
 initn: 370 init1: 162 opt: 361  Z-score: 378.0  bits: 80.2 E(32554): 9.8e-15
Smith-Waterman score: 361; 29.6% identity (60.3% similar) in 247 aa overlap (557-796:251-492)

        530       540       550       560        570       580     
pF1KE1 SAEELAKRREEEKGRPVKSLKVPRPTKSSFDPFQLIPCNFFSE-EKQEPFQVKVASEALL
                                     .:  :.  . :.  .: .::.: :.:..:.
CCDS74 PEATTPGKRVDSKIRVPVRYCMLGSRDLARNPHTLVEVTSFAAINKFQPFNVAVSSNVLF
              230       240       250       260       270       280

         590       600       610       620       630       640     
pF1KE1 IMDLHAHVSMAEVIGLLGGRYSEVDKVVEVCAAEPCNSLSTGLQCEMDPVSQTQASETLA
       ..:.:.:.. .::.: ::::..  .... :  : :: :   : . :   . . .  ..: 
CCDS74 LLDFHSHLTRSEVVGYLGGRWDVNSQMLTVLRAFPCRS-RLG-DAETAAAIEEEIYQSLF
              290       300       310        320        330        

         650       660       670       680          690       700  
pF1KE1 VRGFSVIGWYHSHPAFDPNPSLRDIDTQAKYQSYF---SRGGAKFIGMIVSPYNRNNPLP
       .::.:..:::::::     :::.:::.:  ::  .   : :    .... :::  .:: :
CCDS74 LRGLSLVGWYHSHPHSPALPSLQDIDAQMDYQLRLQGSSNGFQPCLALLCSPYYSGNPGP
      340       350       360       370       380       390        

            710         720       730       740       750       760
pF1KE1 YSQITCLVI--SEEISPDGSYRLPYKFEVQQMLEEPQWGLVFEKTRWIIEKYRLSHSSVP
        :.:. . .    :  :. .: .:.  :.  . .    . ....   ..: :. : . : 
CCDS74 ESKISPFWVMPPPEQRPS-DYGIPMDVEMAYVQDSFLTNDILHEMMLLVEFYKGSPDLVR
      400       410        420       430       440       450       

              770        780       790       800       810         
pF1KE1 MDKIFRRDSDLTCLQKL-LECMRKTLSKVTNCFMAEEFLTEIENLFLSNYKSNQENGVTE
       ... . ..   : :.:: .    .: .  . : . :.                       
CCDS74 LQEPWSQEH--TYLDKLKISLASRTPKDQSLCHVLEQVCGVLKQGS              
       460         470       480       490       500               

     820        
pF1KE1 ENCTKELLM

>>CCDS42470.1 MPND gene_id:84954|Hs108|chr19              (471 aa)
 initn: 370 init1: 162 opt: 347  Z-score: 363.9  bits: 77.5 E(32554): 6e-14
Smith-Waterman score: 347; 33.3% identity (61.5% similar) in 213 aa overlap (557-763:251-454)

        530       540       550       560        570       580     
pF1KE1 SAEELAKRREEEKGRPVKSLKVPRPTKSSFDPFQLIPCNFFSE-EKQEPFQVKVASEALL
                                     .:  :.  . :.  .: .::.: :.:..:.
CCDS42 PEATTPGKRVDSKIRVPVRYCMLGSRDLARNPHTLVEVTSFAAINKFQPFNVAVSSNVLF
              230       240       250       260       270       280

         590       600       610       620       630       640     
pF1KE1 IMDLHAHVSMAEVIGLLGGRYSEVDKVVEVCAAEPCNSLSTGLQCEMDPVSQTQASETLA
       ..:.:.:.. .::.: ::::..  .... :  : :: :   : . :   . . .  ..: 
CCDS42 LLDFHSHLTRSEVVGYLGGRWDVNSQMLTVLRAFPCRS-RLG-DAETAAAIEEEIYQSLF
              290       300       310        320        330        

         650       660       670       680          690       700  
pF1KE1 VRGFSVIGWYHSHPAFDPNPSLRDIDTQAKYQSYF---SRGGAKFIGMIVSPYNRNNPLP
       .::.:..:::::::     :::.:::.:  ::  .   : :    .... :::  .:: :
CCDS42 LRGLSLVGWYHSHPHSPALPSLQDIDAQMDYQLRLQGSSNGFQPCLALLCSPYYSGNPGP
      340       350       360       370       380       390        

            710       720       730        740       750        760
pF1KE1 YSQITCLVISEEISPDGSYRLPYKFEVQQM-LEEPQWGLVFEKTRWIIEKYRLSHSS-VP
        :.:. . .     :.      ::   . . :.:: :.   :.:   ..: ..: .: .:
CCDS42 ESKISPFWVMPP--PEMLLVEFYKGSPDLVRLQEP-WSQ--EHTY--LDKLKISLASRTP
      400       410         420       430            440       450 

              770       780       790       800       810       820
pF1KE1 MDKIFRRDSDLTCLQKLLECMRKTLSKVTNCFMAEEFLTEIENLFLSNYKSNQENGVTEE
        :.                                                         
CCDS42 KDQSLCHVLEQVCGVLKQGS                                        
             460       470                                         




828 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:59:55 2016 done: Sun Nov  6 04:59:56 2016
 Total Scan time:  3.380 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]