Result of FASTA (ccds) for
pFN21AE1191
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1191, 824 aa
1>>>pF1KE1191 824 - 824 aa - 824 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.2897+/-0.00107; mu= -6.0706+/- 0.064
mean_var=296.6209+/-60.994, 0's: 0 Z-trim(113.7): 61 B-trim: 382 in 1/52
Lambda= 0.074469
statistics sampled from 14268 (14329) to 14268 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.44), width: 16
Scan time: 4.360
The best scores are: opt bits E(32554)
CCDS2048.1 NPAS2 gene_id:4862|Hs108|chr2 ( 824) 5537 608.8 1.2e-173
CCDS3500.1 CLOCK gene_id:9575|Hs108|chr4 ( 846) 2567 289.7 1.4e-77
>>CCDS2048.1 NPAS2 gene_id:4862|Hs108|chr2 (824 aa)
initn: 5537 init1: 5537 opt: 5537 Z-score: 3230.9 bits: 608.8 E(32554): 1.2e-173
Smith-Waterman score: 5537; 99.9% identity (100.0% similar) in 824 aa overlap (1-824:1-824)
10 20 30 40 50 60
pF1KE1 MDEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSMLPGNTRKMDKTTVLEKVIGFLQKHN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MDEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSMLPGNTRKMDKTTVLEKVIGFLQKHN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 EVSAQTEICDIQQDWKPSFLSNEEFTQLMLEALDGFIIAVTTDGSIIYVSDSITPLLGHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 EVSAQTEICDIQQDWKPSFLSNEEFTQLMLEALDGFIIAVTTDGSIIYVSDSITPLLGHL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 PSDVMDQNLLNFLPEQEHSEVYKILSSHMLVTDSPSPEYLKSDSDLEFYCHLLRGSLNPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 PSDVMDQNLLNFLPEQEHSEVYKILSSHMLVTDSPSPEYLKSDSDLEFYCHLLRGSLNPK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 EFPTYEYIKFVGNFRSYNNVPSPSCNGFDNTLSRPCRVPLGKEVCFIATVRLATPQFLKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 EFPTYEYIKFVGNFRSYNNVPSPSCNGFDNTLSRPCRVPLGKEVCFIATVRLATPQFLKE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 MCIVDEPLEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHIDDLELLARCH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MCIVDEPLEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHIDDLELLARCH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 QHLMQFGKGKSCCYRFLTKGQQWIWLQTHYYITYHQWNSKPEFIVCTHSVVSYADVRVER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 QHLMQFGKGKSCCYRFLTKGQQWIWLQTHYYITYHQWNSKPEFIVCTHSVVSYADVRVER
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 RQELALEDPPSEALHSSALKDKGSSLEPRQHFNALDVGASGLNTSHSPSASSRSSHKSSH
:::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
CCDS20 RQELALEDPPSEALHSSALKDKGSSLEPRQHFNTLDVGASGLNTSHSPSASSRSSHKSSH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE1 TAMSEPTSTPTKLMAEASTPALPRSATLPQELPVPGLSQAATMPAPLPSPSSCDLTQQLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 TAMSEPTSTPTKLMAEASTPALPRSATLPQELPVPGLSQAATMPAPLPSPSSCDLTQQLL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE1 PQTVLQSTPAPMAQFSAQFSMFQTIKDQLEQRTRILQANIRWQQEELHKIQEQLCLVQDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 PQTVLQSTPAPMAQFSAQFSMFQTIKDQLEQRTRILQANIRWQQEELHKIQEQLCLVQDS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE1 NVQMFLQQPAVSLSFSSTQRPEAQQQLQQRSAAVTQPQLGAGPQLPGQISSAQVTSQHLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 NVQMFLQQPAVSLSFSSTQRPEAQQQLQQRSAAVTQPQLGAGPQLPGQISSAQVTSQHLL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE1 RESSVISTQGPKPMRSSQLMQSSGRSGSSLVSPFSSATAALPPSLNLTTPASTSQDASQC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 RESSVISTQGPKPMRSSQLMQSSGRSGSSLVSPFSSATAALPPSLNLTTPASTSQDASQC
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE1 QPSPDFSHDRQLRLLLSQPIQPMMPGSCDARQPSEVSRTGRQVKYAQSQTVFQNPDAHPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 QPSPDFSHDRQLRLLLSQPIQPMMPGSCDARQPSEVSRTGRQVKYAQSQTVFQNPDAHPA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE1 NSSSAPMPVLLMGQAVLHPSFPASQPSPLQPAQARQQPPQHYLQVQAPTSLHSEQQDSLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 NSSSAPMPVLLMGQAVLHPSFPASQPSPLQPAQARQQPPQHYLQVQAPTSLHSEQQDSLL
730 740 750 760 770 780
790 800 810 820
pF1KE1 LSTYSQQPGTLGYPQPPPAQPQPLRPPRRVSSLSESSGLQQPPR
::::::::::::::::::::::::::::::::::::::::::::
CCDS20 LSTYSQQPGTLGYPQPPPAQPQPLRPPRRVSSLSESSGLQQPPR
790 800 810 820
>>CCDS3500.1 CLOCK gene_id:9575|Hs108|chr4 (846 aa)
initn: 2378 init1: 1955 opt: 2567 Z-score: 1506.2 bits: 289.7 E(32554): 1.4e-77
Smith-Waterman score: 2567; 50.9% identity (75.3% similar) in 839 aa overlap (1-820:26-844)
10 20 30
pF1KE1 MDEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSM
..::.::.:::.::::::::::::::::::::.::
CCDS35 MLFTVSCSKMSSIVDRDDSSIFDGLVEEDDKDKAKRVSRNKSEKKRRDQFNVLIKELGSM
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE1 LPGNTRKMDKTTVLEKVIGFLQKHNEVSAQTEICDIQQDWKPSFLSNEEFTQLMLEALDG
::::.:::::.:::.: : ::.::.:..::.. .:.:::::.:::::::::::::::::
CCDS35 LPGNARKMDKSTVLQKSIDFLRKHKEITAQSDASEIRQDWKPTFLSNEEFTQLMLEALDG
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE1 FIIAVTTDGSIIYVSDSITPLLGHLPSDVMDQNLLNFLPEQEHSEVYKILSSHMLVTDSP
:..:. :::::::::.:.: :: :::::..::...::.:: ::::::::::.:.: .::
CCDS35 FFLAIMTDGSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILSTHLLESDSL
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE1 SPEYLKSDSDLEFYCHLLRGSLNPKEFPTYEYIKFVGNFRSYNNVPSPSCNGFDNTLSRP
.:::::: ..::: ::.:::...::: ::::.::.:::.: :.: : . :::..:..:
CCDS35 TPEYLKSKNQLEFCCHMLRGTIDPKEPSTYEYVKFIGNFKSLNSVSSSAHNGFEGTIQRT
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE1 CRVPLGKEVCFIATVRLATPQFLKEMCIVDEPLEEFTSRHSLEWKFLFLDHRAPPIIGYL
: .:::.::::::::::.:::: :.:: :::::::::::::::::::::::::::
CCDS35 HRPSYEDRVCFVATVRLATPQFIKEMCTVEEPNEEFTSRHSLEWKFLFLDHRAPPIIGYL
250 260 270 280 290 300
280 290 300 310 320 330
pF1KE1 PFEVLGTSGYDYYHIDDLELLARCHQHLMQFGKGKSCCYRFLTKGQQWIWLQTHYYITYH
::::::::::::::.:::: ::.::.::::.:::::: ::::::::::::::::::::::
CCDS35 PFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYH
310 320 330 340 350 360
340 350 360 370 380 390
pF1KE1 QWNSKPEFIVCTHSVVSYADVRVERRQELALEDP-PSEALHSSALKDKGSSLEPRQHFNA
::::.::::::::.:::::.::.:::.::..:. : : .: .:.:: . : . .
CCDS35 QWNSRPEFIVCTHTVVSYAEVRAERRRELGIEESLPETAADKS--QDSGS--DNRINTVS
370 380 390 400 410
400 410 420 430 440 450
pF1KE1 LDVGASGLNTSHSPSASSRSSHKSSHTAMSEPTSTPTKLMAEASTPALPRSATLPQELPV
: . .. : .::::::::.::::::.:.:.:::::. ...::: ::. .: :
CCDS35 LKEALERFDHSPTPSASSRSSRKSSHTAVSDPSSTPTKIPTDTSTP--PRQHLPAHEKMV
420 430 440 450 460 470
460 470 480 490 500 510
pF1KE1 PGLSQAATMPAPLPSPSSCDLTQQLLPQTVLQSTPAPMAQF--SAQFSMFQTIKDQLEQR
:. ... : .: .::: .. :.. : :.:: :::.. .: .:::::::
CCDS35 QRRSSFSSQSINSQSVGS-SLTQPVMSQATNLPIPQGMSQFQFSAQLGAMQHLKDQLEQR
480 490 500 510 520 530
520 530 540 550 560 570
pF1KE1 TRILQANIRWQQEELHKIQEQLCLVQDSNVQMFLQQPAVSLSFSSTQRPEAQQQ-LQQRS
::...:::. :::::.:::::: .:. ...:::::: .:.:.:.: .... .:: .
CCDS35 TRMIEANIHRQQEELRKIQEQLQMVHGQGLQMFLQQSNPGLNFGSVQLSSGNSSNIQQLA
540 550 560 570 580 590
580 590 600 610 620
pF1KE1 AAVTQPQLGAGPQLPGQISSAQV-TSQHLLRESSV--ISTQGPKPMRSSQLMQSS--GRS
: :. :. . ...... :.::....... :::. . . :.. .:.: ...
CCDS35 PINMQGQVVPTNQIQSGMNTGHIGTTQHMIQQQTLQSTSTQSQQNVLSGHSQQTSLPSQT
600 610 620 630 640 650
630 640 650 660 670 680
pF1KE1 GSSLVSP-FSSATAALPPSLNLTT-PASTSQDASQCQPSPDFSHDRQLRLLLSQPIQPMM
:.:..: ... . . : . ... :.: :...: :..:::.:. .: . .
CCDS35 QSTLTAPLYNTMVISQPAAGSMVQIPSSMPQNSTQSAAVTTFTQDRQIRFSQGQQLVTKL
660 670 680 690 700 710
690 700 710 720 730 740
pF1KE1 ---PGSCDARQ-PSEVSRTGRQVKYAQSQTVFQNPDAHPANSSSAPMPVLLMGQAVLHPS
: .: : . :: . ..:.: : ...: . : . : . :
CCDS35 VTAPVACGAVMVPSTM---------LMGQVVTAYPTFATQQQQSQTLSVTQQQQQ--QSS
720 730 740 750 760
750 760 770 780 790
pF1KE1 FPASQPSPLQPAQAR-QQPPQHYLQVQAPTSLHSEQQDSLLLST-YSQQPGTL--GYPQP
. : ::.::. ::::..::.. ::.. . .:.::. . : .:. .. :
CCDS35 QEQQLTSVQQPSQAQLTQPPQQFLQTS--RLLHGNPSTQLILSAAFPLQQSTFPQSHHQQ
770 780 790 800 810 820
800 810 820
pF1KE1 PPAQPQPLRPPRRVSSLSESSGLQQPPR
.: : .:..:: . : .:
CCDS35 HQSQQQQQLSRHRTDSLPDPSKVQPQ
830 840
824 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 15:58:48 2016 done: Mon Nov 7 15:58:48 2016
Total Scan time: 4.360 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]