FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1173, 606 aa
  1>>>pF1KE1173 606 - 606 aa - 606 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6685+/-0.000976; mu= 17.2881+/- 0.059
 mean_var=70.1700+/-13.787, 0's: 0 Z-trim(104.5): 23  B-trim: 0 in 0/50
 Lambda= 0.153108
 statistics sampled from 7920 (7925) to 7920 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.614), E-opt: 0.2 (0.243), width:  16
 Scan time:  3.230

The best scores are:                                      opt bits E(32554)
CCDS48017.1 SCAI gene_id:286205|Hs108|chr9         ( 606) 4030 899.7       0
CCDS43877.1 SCAI gene_id:286205|Hs108|chr9         ( 629) 3808 850.7       0


>>CCDS48017.1 SCAI gene_id:286205|Hs108|chr9              (606 aa)
 initn: 4030 init1: 4030 opt: 4030  Z-score: 4808.0  bits: 899.7 E(32554):    0
Smith-Waterman score: 4030; 99.8% identity (100.0% similar) in 606 aa overlap (1-606:1-606)

               10        20        30        40        50        60
pF1KE1 MVRGARQPQQPRSRLAPRLTGTVEKPPRKRRSRTEFTLKEIMSSGGAEDDIPQGERKTVT
       ::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::
CCDS48 MVRGARQPQQPRSRLAPRLTGTVEKPPRKRRSRTEFALKEIMSSGGAEDDIPQGERKTVT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DFCYLLDKSKQLFNGLRDLPQYGQKQWQSYFGRTFDVYTKLWKFQQQHRQVLDNRYGLKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 DFCYLLDKSKQLFNGLRDLPQYGQKQWQSYFGRTFDVYTKLWKFQQQHRQVLDNRYGLKR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 WQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAIRQRSYYSQVNKEDRPELVVKKLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 WQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAIRQRSYYSQVNKEDRPELVVKKLR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 YYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQVEWNLVLQEVAAFIEADPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 YYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQVEWNLVLQEVAAFIEADPV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 MVLNDDNTIVITSNRLAETGAPLLEQGMIVGQLSLADALIIGNCNNQVKFSELTVDMFRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MVLNDDNTIVITSNRLAETGAPLLEQGMIVGQLSLADALIIGNCNNQVKFSELTVDMFRM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 LQALEREPMNLASQMNKPGMQESADKPTRRENPHKYLLYKPTFSQLYTFLAASFKELPAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 LQALEREPMNLASQMNKPGMQESADKPTRRENPHKYLLYKPTFSQLYTFLAASFKELPAN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 SVLLIYLSATGVFPTGRSDSEGPYDFGGVLTNSNRDIINGDAIHKRNQSHKEMHCLHPGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 SVLLIYLSATGVFPTGRSDSEGPYDFGGVLTNSNRDIINGDAIHKRNQSHKEMHCLHPGD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 LYPFTRKPLFIIVDSSNSVAYKNFTNLFGQPLVCLLSPTAYPKALQDQSQRGSLFTLFLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 LYPFTRKPLFIIVDSSNSVAYKNFTNLFGQPLVCLLSPTAYPKALQDQSQRGSLFTLFLN
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 NPLMAFLFVSGLSSMRRGLWEKCQEYLRKINRDIAQLLTHSRSIDQAFLQFFGDEFLRLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 NPLMAFLFVSGLSSMRRGLWEKCQEYLRKINRDIAQLLTHSRSIDQAFLQFFGDEFLRLL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE1 LTRFIFCSATMRMHKIFRETRNYPESYPQLPRDETVENPHLQKHILELASILDVRNVFFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 LTRFIFCSATMRMHKIFRETRNYPESYPQLPRDETVENPHLQKHILELASILDVRNVFFE
              550       560       570       580       590       600

             
pF1KE1 NTIDDY
       ::::::
CCDS48 NTIDDY
             

>>CCDS43877.1 SCAI gene_id:286205|Hs108|chr9              (629 aa)
 initn: 4012 init1: 3808 opt: 3808  Z-score: 4542.7  bits: 850.7 E(32554):    0
Smith-Waterman score: 3970; 96.0% identity (96.3% similar) in 629 aa overlap (1-606:1-629)

               10        20        30                              
pF1KE1 MVRGARQPQQPRSRLAPRLTGTVEKPPRKRRS-----------------------RTEFT
       ::::::::::::::::::::::::::::::::                       .:::.
CCDS43 MVRGARQPQQPRSRLAPRLTGTVEKPPRKRRSSIRGSGDSSHSQSQGERYQHFTEKTEFA
               10        20        30        40        50        60

        40        50        60        70        80        90       
pF1KE1 LKEIMSSGGAEDDIPQGERKTVTDFCYLLDKSKQLFNGLRDLPQYGQKQWQSYFGRTFDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LKEIMSSGGAEDDIPQGERKTVTDFCYLLDKSKQLFNGLRDLPQYGQKQWQSYFGRTFDV
               70        80        90       100       110       120

       100       110       120       130       140       150       
pF1KE1 YTKLWKFQQQHRQVLDNRYGLKRWQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 YTKLWKFQQQHRQVLDNRYGLKRWQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAI
              130       140       150       160       170       180

       160       170       180       190       200       210       
pF1KE1 RQRSYYSQVNKEDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RQRSYYSQVNKEDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFN
              190       200       210       220       230       240

       220       230       240       250       260       270       
pF1KE1 TEDQVEWNLVLQEVAAFIEADPVMVLNDDNTIVITSNRLAETGAPLLEQGMIVGQLSLAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TEDQVEWNLVLQEVAAFIEADPVMVLNDDNTIVITSNRLAETGAPLLEQGMIVGQLSLAD
              250       260       270       280       290       300

       280       290       300       310       320       330       
pF1KE1 ALIIGNCNNQVKFSELTVDMFRMLQALEREPMNLASQMNKPGMQESADKPTRRENPHKYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ALIIGNCNNQVKFSELTVDMFRMLQALEREPMNLASQMNKPGMQESADKPTRRENPHKYL
              310       320       330       340       350       360

       340       350       360       370       380       390       
pF1KE1 LYKPTFSQLYTFLAASFKELPANSVLLIYLSATGVFPTGRSDSEGPYDFGGVLTNSNRDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LYKPTFSQLYTFLAASFKELPANSVLLIYLSATGVFPTGRSDSEGPYDFGGVLTNSNRDI
              370       380       390       400       410       420

       400       410       420       430       440       450       
pF1KE1 INGDAIHKRNQSHKEMHCLHPGDLYPFTRKPLFIIVDSSNSVAYKNFTNLFGQPLVCLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 INGDAIHKRNQSHKEMHCLHPGDLYPFTRKPLFIIVDSSNSVAYKNFTNLFGQPLVCLLS
              430       440       450       460       470       480

       460       470       480       490       500       510       
pF1KE1 PTAYPKALQDQSQRGSLFTLFLNNPLMAFLFVSGLSSMRRGLWEKCQEYLRKINRDIAQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PTAYPKALQDQSQRGSLFTLFLNNPLMAFLFVSGLSSMRRGLWEKCQEYLRKINRDIAQL
              490       500       510       520       530       540

       520       530       540       550       560       570       
pF1KE1 LTHSRSIDQAFLQFFGDEFLRLLLTRFIFCSATMRMHKIFRETRNYPESYPQLPRDETVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LTHSRSIDQAFLQFFGDEFLRLLLTRFIFCSATMRMHKIFRETRNYPESYPQLPRDETVE
              550       560       570       580       590       600

       580       590       600      
pF1KE1 NPHLQKHILELASILDVRNVFFENTIDDY
       :::::::::::::::::::::::::::::
CCDS43 NPHLQKHILELASILDVRNVFFENTIDDY
              610       620         




606 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 10:52:53 2016 done: Sun Nov  6 10:52:54 2016
 Total Scan time:  3.230 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]