FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1160, 527 aa
  1>>>pF1KE1160 527 - 527 aa - 527 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.1341+/-0.000939; mu= 2.8817+/- 0.057
 mean_var=224.0150+/-47.265, 0's: 0 Z-trim(114.1): 112  B-trim: 738 in 1/50
 Lambda= 0.085691
 statistics sampled from 14575 (14690) to 14575 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.451), width:  16
 Scan time:  3.880

The best scores are:                                      opt bits E(32554)
CCDS12294.1 NACC1 gene_id:112939|Hs108|chr19       ( 527) 3522 448.0 1.2e-125
CCDS6993.1 NACC2 gene_id:138151|Hs108|chr9         ( 587) 1020 138.8 1.7e-32


>>CCDS12294.1 NACC1 gene_id:112939|Hs108|chr19            (527 aa)
 initn: 3522 init1: 3522 opt: 3522  Z-score: 2369.2  bits: 448.0 E(32554): 1.2e-125
Smith-Waterman score: 3522; 100.0% identity (100.0% similar) in 527 aa overlap (1-527:1-527)

               10        20        30        40        50        60
pF1KE1 MAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 NSRSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQFLLMYTAGFLQIQEIMEKGTEFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NSRSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQFLLMYTAGFLQIQEIMEKGTEFF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LKVSSPSCDSQGLHAEEAPSSEPQSPVAQTSGWPACSTPLPLVSRVKTEQQESDSVQCMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LKVSSPSCDSQGLHAEEAPSSEPQSPVAQTSGWPACSTPLPLVSRVKTEQQESDSVQCMP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VAKRLWDSGQKEAGGGGNGSRKMAKFSTPDLAANRPHQPPPPQQAPVVAAAQPAVAAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VAKRLWDSGQKEAGGGGNGSRKMAKFSTPDLAANRPHQPPPPQQAPVVAAAQPAVAAGAG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 QPAGGVAAAGGVVSGPSTSERTSPGTSSAYTSDSPGSYHNEEDEEEDGGEEGMDEQYRQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QPAGGVAAAGGVVSGPSTSERTSPGTSSAYTSDSPGSYHNEEDEEEDGGEEGMDEQYRQI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 CNMYTMYSMMNVGQTAEKVEALPEQVAPESRNRIRVRQDLASLPAELINQIGNRCHPKLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 CNMYTMYSMMNVGQTAEKVEALPEQVAPESRNRIRVRQDLASLPAELINQIGNRCHPKLY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 DEGDPSEKLELVTGTNVYITRAQLMNCHVSAGTRHKVLLRRLLASFFDRNTLANSCGTGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DEGDPSEKLELVTGTNVYITRAQLMNCHVSAGTRHKVLLRRLLASFFDRNTLANSCGTGI
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 RSSTNDPRRKPLDSRVLHAVKYYCQNFAPNFKESEMNAIAADMCTNARRVVRKSWMPKVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RSSTNDPRRKPLDSRVLHAVKYYCQNFAPNFKESEMNAIAADMCTNARRVVRKSWMPKVK
              430       440       450       460       470       480

              490       500       510       520       
pF1KE1 VLKAEDDAYTTFISETGKIEPDMMGVEHGFETASHEGEAGPSAEALQ
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VLKAEDDAYTTFISETGKIEPDMMGVEHGFETASHEGEAGPSAEALQ
              490       500       510       520       

>>CCDS6993.1 NACC2 gene_id:138151|Hs108|chr9              (587 aa)
 initn: 1662 init1: 800 opt: 1020  Z-score: 696.9  bits: 138.8 E(32554): 1.7e-32
Smith-Waterman score: 1666; 56.2% identity (73.9% similar) in 514 aa overlap (1-501:1-478)

               10        20        30        40        50        60
pF1KE1 MAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFN
       :.: :..:::::::..: ::::::: :::::::.::::.::::::::::::: ::::::.
CCDS69 MSQMLHIEIPNFGNTVLGCLNEQRLLGLYCDVSIVVKGQAFKAHRAVLAASSLYFRDLFS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 NSRSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQFLLMYTAGFLQIQEIMEKGTEFF
       .. ... :::..: :  :::::::::::::.:....:...::::::::::.:.:.::...
CCDS69 GNSKSAFELPGSVPPACFQQILSFCYTGRLTMTASEQLVVMYTAGFLQIQHIVERGTDLM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LKVSSPSCDSQGLHAEEAPSSEPQSPVAQTSGWPACSTPLPLVSRVKTEQQESDSVQCMP
       .::::: ::::    :.: .::::::  : .  :: ..  : :         : ::  .:
CCDS69 FKVSSPHCDSQTAVIEDA-GSEPQSPCNQLQ--PAAAAAAPYVV--------SPSVP-IP
              130        140       150         160                 

              190       200       210       220       230       240
pF1KE1 VAKRLWDSGQKEAGGGGNGSRKMAKFSTPDLAANRPHQPPPPQQAPVVAAAQPAVAAGAG
       .  :.   ...   .:            : :: .:: .  :  .  :..::  :::::..
CCDS69 LLTRVKHEAMELPPAG------------PGLAPKRPLETGP--RDGVAVAAGAAVAAGTA
      170       180                   190         200       210    

                    250            260       270       280         
pF1KE1 Q---PA---GGVAAAGGVVSG----P-STSERTSPGTSSAYTSDSPGSYHNEEDEEEDGG
           :     :: . . .. :    :   .::::::.::  :.::: :::::::::.: .
CCDS69 PLKLPRVSYYGVPSLATLIPGIQQMPYPQGERTSPGASSLPTTDSPTSYHNEEDEEDDEA
          220       230       240       250       260       270    

     290        300       310       320       330       340        
pF1KE1 EEGM-DEQYRQICNMYTMYSMMNVGQTAEKVEALPEQVAPESRNRIRVRQDLASLPAELI
        . : .::: :   ::   :    :. :  :.  :: :  :::. . .:.::..::: ::
CCDS69 YDTMVEEQYGQ---MYIKAS----GSYA--VQEKPEPVPLESRSCVLIRRDLVALPASLI
          280          290             300       310       320     

      350       360       370       380       390       400        
pF1KE1 NQIGNRCHPKLYDEGDPSEKLELVTGTNVYITRAQLMNCHVSAGTRHKVLLRRLLASFFD
       .::: :::::::.::::.::::::.:..:::::.::::::. ::..::::::::::.:::
CCDS69 SQIGYRCHPKLYSEGDPGEKLELVAGSGVYITRGQLMNCHLCAGVKHKVLLRRLLATFFD
         330       340       350       360       370       380     

      410       420       430       440       450       460        
pF1KE1 RNTLANSCGTGIRSSTNDPRRKPLDSRVLHAVKYYCQNFAPNFKESEMNAIAADMCTNAR
       ::::::::::::::::.:: :::::::::.::: :::::::.:::::::.::::::::::
CCDS69 RNTLANSCGTGIRSSTSDPSRKPLDSRVLNAVKLYCQNFAPSFKESEMNVIAADMCTNAR
         390       400       410       420       430       440     

      470       480        490       500       510       520       
pF1KE1 RVVRKSWMPKVKVLKAED-DAYTTFISETGKIEPDMMGVEHGFETASHEGEAGPSAEALQ
       :: :: :.::.: .  :  . : : .. ..   :                          
CCDS69 RV-RKRWLPKIKSMLPEGVEMYRTVMGSAAASVPLDPEFPPAAAQVFEQRIYAERRGDAA
          450       460       470       480       490       500    

CCDS69 TIVALRTDAVNVDLSAAANPAFDAGEEVDGAGSVIQEVAAPEPLPADGQSPPQPFEQGGG
          510       520       530       540       550       560    




527 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:40:49 2016 done: Sat Nov  5 02:40:50 2016
 Total Scan time:  3.880 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]