FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1147, 462 aa
  1>>>pF1KE1147 462 - 462 aa - 462 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.4016+/-0.000828; mu= 1.1110+/- 0.050
 mean_var=216.9590+/-44.016, 0's: 0 Z-trim(114.5): 17  B-trim: 19 in 2/54
 Lambda= 0.087073
 statistics sampled from 15053 (15066) to 15053 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.463), width:  16
 Scan time:  3.940

The best scores are:                                      opt bits E(32554)
CCDS3671.1 INTS12 gene_id:57117|Hs108|chr4         ( 462) 2958 383.8  2e-106


>>CCDS3671.1 INTS12 gene_id:57117|Hs108|chr4              (462 aa)
 initn: 2958 init1: 2958 opt: 2958  Z-score: 2024.3  bits: 383.8 E(32554): 2e-106
Smith-Waterman score: 2958; 100.0% identity (100.0% similar) in 462 aa overlap (1-462:1-462)

               10        20        30        40        50        60
pF1KE1 MAATVNLELDPIFLKALGFLHSKSKDSAEKLKALLDESLARGIDSSYRPSQKDVEPPKIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MAATVNLELDPIFLKALGFLHSKSKDSAEKLKALLDESLARGIDSSYRPSQKDVEPPKIS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 STKNISIKQEPKISSSLPSGNNNGKVLTTEKVKKEAEKRPADKMKSDITEGVDIPKKPRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 STKNISIKQEPKISSSLPSGNNNGKVLTTEKVKKEAEKRPADKMKSDITEGVDIPKKPRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 EKPETQSSPITVQSSKDLPMADLSSFEETSADDFAMEMGLACVVCRQMMVASGNQLVECQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 EKPETQSSPITVQSSKDLPMADLSSFEETSADDFAMEMGLACVVCRQMMVASGNQLVECQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 ECHNLYHRDCHKPQVTDKEANDPRLVWYCARCTRQMKRMAQKTQKPPQKPAPAVVSVTPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 ECHNLYHRDCHKPQVTDKEANDPRLVWYCARCTRQMKRMAQKTQKPPQKPAPAVVSVTPA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 VKDPLVKKPETKLKQETTFLAFKRTEVKTSTVISGNSSSASVSSSVTSGLTGWAAFAAKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 VKDPLVKKPETKLKQETTFLAFKRTEVKTSTVISGNSSSASVSSSVTSGLTGWAAFAAKT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 SSAGPSTAKLSSTTQNNTGKPATSSANQKPVGLTGLATSSKGGIGSKIGSNNSTTPTVPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 SSAGPSTAKLSSTTQNNTGKPATSSANQKPVGLTGLATSSKGGIGSKIGSNNSTTPTVPL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 KPPPPLTLGKTGLSRSVSCDNVSKVGLPSPSSLVPGSSSQLSGNGNSGTSGPSGSTTSKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 KPPPPLTLGKTGLSRSVSCDNVSKVGLPSPSSLVPGSSSQLSGNGNSGTSGPSGSTTSKT
              370       380       390       400       410       420

              430       440       450       460  
pF1KE1 TSESSSSPSASLKGPTSQESQLNAMKRLQMVKKKAAQKKLKK
       ::::::::::::::::::::::::::::::::::::::::::
CCDS36 TSESSSSPSASLKGPTSQESQLNAMKRLQMVKKKAAQKKLKK
              430       440       450       460  




462 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:20:26 2016 done: Sun Nov  6 17:20:26 2016
 Total Scan time:  3.940 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]