FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1144, 428 aa
  1>>>pF1KE1144 428 - 428 aa - 428 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7646+/-0.000991; mu= 14.5809+/- 0.060
 mean_var=69.2335+/-13.937, 0's: 0 Z-trim(104.6): 32  B-trim: 10 in 1/49
 Lambda= 0.154140
 statistics sampled from 7970 (7993) to 7970 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.246), width:  16
 Scan time:  2.980

The best scores are:                                      opt bits E(32554)
CCDS9457.1 FBXL3 gene_id:26224|Hs108|chr13         ( 428) 2891 652.2 2.7e-187


>>CCDS9457.1 FBXL3 gene_id:26224|Hs108|chr13              (428 aa)
 initn: 2891 init1: 2891 opt: 2891  Z-score: 3475.9  bits: 652.2 E(32554): 2.7e-187
Smith-Waterman score: 2891; 100.0% identity (100.0% similar) in 428 aa overlap (1-428:1-428)

               10        20        30        40        50        60
pF1KE1 MKRGGRDSDRNSSEEGTAEKSKKLRTTNEHSQTCDWGNLLQDIILQVFKYLPLLDRAHAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 MKRGGRDSDRNSSEEGTAEKSKKLRTTNEHSQTCDWGNLLQDIILQVFKYLPLLDRAHAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 QVCRNWNQVFHMPDLWRCFEFELNQPATSYLKATHPELIKQIIKRHSNHLQYVSFKVDSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 QVCRNWNQVFHMPDLWRCFEFELNQPATSYLKATHPELIKQIIKRHSNHLQYVSFKVDSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 KESAEAACDILSQLVNCSLKTLGLISTARPSFMDLPKSHFISALTVVFVNSKSLSSLKID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 KESAEAACDILSQLVNCSLKTLGLISTARPSFMDLPKSHFISALTVVFVNSKSLSSLKID
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 DTPVDDPSLKVLVANNSDTLKLLKMSSCPHVSPAGILCVADQCHGLRELALNYHLLSDEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 DTPVDDPSLKVLVANNSDTLKLLKMSSCPHVSPAGILCVADQCHGLRELALNYHLLSDEL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 LLALSSEKHVRLEHLRIDVVSENPGQTHFHTIQKSSWDAFIRHSPKVNLVMYFFLYEEEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 LLALSSEKHVRLEHLRIDVVSENPGQTHFHTIQKSSWDAFIRHSPKVNLVMYFFLYEEEF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 DPFFRYEIPATHLYFGRSVSKDVLGRVGMTCPRLVELVVCANGLRPLDEELIRIAERCKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 DPFFRYEIPATHLYFGRSVSKDVLGRVGMTCPRLVELVVCANGLRPLDEELIRIAERCKN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 LSAIGLGECEVSCSAFVEFVKMCGGRLSQLSIMEEVLIPDQKYSLEQIHWEVSKHLGRVW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 LSAIGLGECEVSCSAFVEFVKMCGGRLSQLSIMEEVLIPDQKYSLEQIHWEVSKHLGRVW
              370       380       390       400       410       420

               
pF1KE1 FPDMMPTW
       ::::::::
CCDS94 FPDMMPTW
               




428 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:34:23 2016 done: Sun Nov  6 14:34:24 2016
 Total Scan time:  2.980 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]