FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1143, 425 aa
  1>>>pF1KE1143 425 - 425 aa - 425 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5248+/-0.000901; mu= 11.5655+/- 0.054
 mean_var=93.3939+/-18.620, 0's: 0 Z-trim(108.2): 26  B-trim: 79 in 1/51
 Lambda= 0.132713
 statistics sampled from 10033 (10052) to 10033 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.309), width:  16
 Scan time:  2.690

The best scores are:                                      opt bits E(32554)
CCDS9909.1 UBR7 gene_id:55148|Hs108|chr14          ( 425) 2935 572.2 3.4e-163


>>CCDS9909.1 UBR7 gene_id:55148|Hs108|chr14               (425 aa)
 initn: 2935 init1: 2935 opt: 2935  Z-score: 3043.4  bits: 572.2 E(32554): 3.4e-163
Smith-Waterman score: 2935; 100.0% identity (100.0% similar) in 425 aa overlap (1-425:1-425)

               10        20        30        40        50        60
pF1KE1 MAGAEGAAGRQSELEPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVKRQALYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 MAGAEGAAGRQSELEPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVKRQALYA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLLPDKAKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLLPDKAKV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 NSGNKYNDNFFGLYCICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLGAIPPESGDFQEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 NSGNKYNDNFFGLYCICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLGAIPPESGDFQEM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VCQACMKRCSFLWAYAAQLAVTKISTEDDGLVRNIDGIGDQEVIKPENGEHQDSTLKEDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 VCQACMKRCSFLWAYAAQLAVTKISTEDDGLVRNIDGIGDQEVIKPENGEHQDSTLKEDV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 PEQGKDDVREVKVEQNSEPCAGSSSESDLQTVFKNESLNAESKSGCKLQELKAKQLIKKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 PEQGKDDVREVKVEQNSEPCAGSSSESDLQTVFKNESLNAESKSGCKLQELKAKQLIKKD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 TATYWPLNWRSKLCTCQDCMKMYGDLDVLFLTDEYDTVLAYENKGKIAQATDRSDPLMDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 TATYWPLNWRSKLCTCQDCMKMYGDLDVLFLTDEYDTVLAYENKGKIAQATDRSDPLMDT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 LSSMNRVQQVELICEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRRVDGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 LSSMNRVQQVELICEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRRVDGM
              370       380       390       400       410       420

            
pF1KE1 QYYCS
       :::::
CCDS99 QYYCS
            




425 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:23:58 2016 done: Sun Nov  6 14:23:58 2016
 Total Scan time:  2.690 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]