Result of FASTA (ccds) for
pFN21AE1142
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1142, 420 aa
1>>>pF1KE1142 420 - 420 aa - 420 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8154+/-0.000852; mu= 11.4593+/- 0.051
mean_var=121.4867+/-24.147, 0's: 0 Z-trim(110.7): 33 B-trim: 0 in 0/51
Lambda= 0.116362
statistics sampled from 11804 (11831) to 11804 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.727), E-opt: 0.2 (0.363), width: 16
Scan time: 2.890
The best scores are: opt bits E(32554)
CCDS47007.1 TADA2B gene_id:93624|Hs108|chr4 ( 420) 2832 486.3 2.3e-137
CCDS11319.1 TADA2A gene_id:6871|Hs108|chr17 ( 443) 512 96.9 4.2e-20
CCDS45656.1 TADA2A gene_id:6871|Hs108|chr17 ( 305) 434 83.6 2.7e-16
>>CCDS47007.1 TADA2B gene_id:93624|Hs108|chr4 (420 aa)
initn: 2832 init1: 2832 opt: 2832 Z-score: 2579.5 bits: 486.3 E(32554): 2.3e-137
Smith-Waterman score: 2832; 100.0% identity (100.0% similar) in 420 aa overlap (1-420:1-420)
10 20 30 40 50 60
pF1KE1 MAELGKKYCVYCLAEVSPLRFRCTECQDIELCPECFSAGAEIGHHRRYHGYQLVDGGRFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MAELGKKYCVYCLAEVSPLRFRCTECQDIELCPECFSAGAEIGHHRRYHGYQLVDGGRFT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LWGPEAEGGWTSREEQLLLDAIEQFGFGNWEDMAAHVGASRTPQEVMEHYVSMYIHGNLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LWGPEAEGGWTSREEQLLLDAIEQFGFGNWEDMAAHVGASRTPQEVMEHYVSMYIHGNLG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 KACIPDTIPNRVTDHTCPSGGPLSPSLTTPLPPLDISVAEQQQLGYMPLRDDYEIEYDQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KACIPDTIPNRVTDHTCPSGGPLSPSLTTPLPPLDISVAEQQQLGYMPLRDDYEIEYDQD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 AETLISGLSVNYDDDDVEIELKRAHVDMYVRKLKERQRRKNIARDYNLVPAFLGKDKKEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AETLISGLSVNYDDDDVEIELKRAHVDMYVRKLKERQRRKNIARDYNLVPAFLGKDKKEK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 EKALKRKITKEEKELRLKLRPLYQFMSCKEFDDLFENMHKEKMLRAKIRELQRYRRNGIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EKALKRKITKEEKELRLKLRPLYQFMSCKEFDDLFENMHKEKMLRAKIRELQRYRRNGIT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 KMEESAEYEAARHKREKRKENKNLAGSKRGKEDGKDSEFAAIENLPGFELLSDREKVLCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KMEESAEYEAARHKREKRKENKNLAGSKRGKEDGKDSEFAAIENLPGFELLSDREKVLCS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 SLNLSPARYVTVKTIIIKDHLQKRQGIPSKSRLPSYLDKVLKKRILNFLTESGWISRDAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SLNLSPARYVTVKTIIIKDHLQKRQGIPSKSRLPSYLDKVLKKRILNFLTESGWISRDAS
370 380 390 400 410 420
>>CCDS11319.1 TADA2A gene_id:6871|Hs108|chr17 (443 aa)
initn: 571 init1: 189 opt: 512 Z-score: 474.3 bits: 96.9 E(32554): 4.2e-20
Smith-Waterman score: 557; 27.6% identity (56.6% similar) in 445 aa overlap (6-417:14-442)
10 20 30 40 50
pF1KE1 MAELGKKYCVYCLAEVSPLRFRCTEC--QDIELCPECFSAGAEIGHHRRYHG
: : : . . ..:.:: . :: .::. : : .:. :
CCDS11 MDRLGSFSNDPSDKPPCRGCSSYLMEPYIKCAECGPPPFFLCLQCFTRGFEYKKHQSDHT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 YQLVDGGRFTLWGPEAEGGWTSREEQLLLDAIEQFGFGNWEDMAAHVGASRTPQEVMEHY
:... . : . : .::..::. ::.:. . :::::.:.: .. ..: .: .::
CCDS11 YEIMTSD-FPVLDP----SWTAQEEMALLEAVMDCGFGNWQDVANQM-CTKTKEECEKHY
70 80 90 100 110
120 130 140 150 160 170
pF1KE1 VSMYIHGNLGKACIPDTIPNRVTDHTCPSGGPLSPSLTTPLPPLDISVAEQQQLGYMPLR
.. .:.. : . . . . . .: .. :. . : : .: :. ... :::: :
CCDS11 MKHFINNPLFASTLLN-LKQAEEAKTADTAIPFHSTDDPPRPTFD-SLLSRDMAGYMPAR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 DDYEIEYDQDAETLISGLSVNYDDDDVEIELKRAHVDMYVRKLKERQRRKNIARDYNLVP
:. :.:. :: . .. ::.:. :: : ::.: .::::::::.: ::..:.
CCDS11 ADFIEEFDNYAEWDLRDIDFVEDDSDILHALKMAVVDIYHSRLKERQRRKKIIRDHGLI-
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE1 AFLGKDKKEKEKALKRKITKEEKELRLKLRPLYQFMSCKEFDDLFENMHKEKMLRAKIRE
. .: . ..:. :: ..: .: . .... : : ..:. : :: .:..
CCDS11 ------NLRKFQLMERRYPKEVQDLYETMRRFARIVGPVEHDKFIESHALEFELRREIKR
240 250 260 270 280
300 310 320 330
pF1KE1 LQRYRRNGITKMEESAEYEAARHKREKRKENKNLAGSK--------------RGKED---
::.:: :::.. . :. .. ::... .... . : . :
CCDS11 LQEYRTAGITNFCSARTYDHLKKTREEERLKRTMLSEVLQYIQDSSACQQWLRRQADIDS
290 300 310 320 330 340
340 350 360 370 380
pF1KE1 ------------GKDSEFA-AIENLPGFELLSDREKVLCSSLNLSPARYVTVKTIIIKDH
:. : . .::: : :...:: ::. . : :. :. :. .. ..
CCDS11 GLSPSIPMASNSGRRSAPPLNLTGLPGTEKLNEKEKELCQMVRLVPGAYLEYKSALL-NE
350 360 370 380 390 400
390 400 410 420
pF1KE1 LQKRQGIP-SKSRLPSYLDKVLKKRILNFLTESGWISRDAS
.:. :. ...: .: ..: .:: . :.:..
CCDS11 CNKQGGLRLAQARALIKIDVNKTRKIYDFLIREGYITKG
410 420 430 440
>>CCDS45656.1 TADA2A gene_id:6871|Hs108|chr17 (305 aa)
initn: 399 init1: 187 opt: 434 Z-score: 405.9 bits: 83.6 E(32554): 2.7e-16
Smith-Waterman score: 434; 30.3% identity (59.9% similar) in 274 aa overlap (6-277:14-272)
10 20 30 40 50
pF1KE1 MAELGKKYCVYCLAEVSPLRFRCTEC--QDIELCPECFSAGAEIGHHRRYHG
: : : . . ..:.:: . :: .::. : : .:. :
CCDS45 MDRLGSFSNDPSDKPPCRGCSSYLMEPYIKCAECGPPPFFLCLQCFTRGFEYKKHQSDHT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 YQLVDGGRFTLWGPEAEGGWTSREEQLLLDAIEQFGFGNWEDMAAHVGASRTPQEVMEHY
:... . : . : .::..::. ::.:. . :::::.:.: .. ..: .: .::
CCDS45 YEIMTSD-FPVLDP----SWTAQEEMALLEAVMDCGFGNWQDVANQM-CTKTKEECEKHY
70 80 90 100 110
120 130 140 150 160 170
pF1KE1 VSMYIHGNLGKACIPDTIPNRVTDHTCPSGGPLSPSLTTPLPPLDISVAEQQQLGYMPLR
.. .:.. : . . . . . .: .. :. . : : .: :. ... :::: :
CCDS45 MKHFINNPLFASTLLN-LKQAEEAKTADTAIPFHSTDDPPRPTFD-SLLSRDMAGYMPAR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 DDYEIEYDQDAETLISGLSVNYDDDDVEIELKRAHVDMYVRKLKERQRRKNIARDYNLVP
:. :.:. :: . .. ::.:. :: : ::.: .::::::::.: ::..:.
CCDS45 ADFIEEFDNYAEWDLRDIDFVEDDSDILHALKMAVVDIYHSRLKERQRRKKIIRDHGLI-
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE1 AFLGKDKKEKEKALKRKITKEEKELRLKLRPLYQFMSCKEFDDLFENMHKEKMLRAKIRE
. .: . ..:. :: ..: .: . .... : : ..:.
CCDS45 ------NLRKFQLMERRYPKEVQDLYETMRRFARIVGPVEHDKFIESHACRWFLSLEQYL
240 250 260 270 280
300 310 320 330 340 350
pF1KE1 LQRYRRNGITKMEESAEYEAARHKREKRKENKNLAGSKRGKEDGKDSEFAAIENLPGFEL
CCDS45 CVYIYINRRDNGVFYVKFYK
290 300
420 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 10:29:19 2016 done: Sun Nov 6 10:29:20 2016
Total Scan time: 2.890 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]