FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1135, 353 aa
  1>>>pF1KE1135 353 - 353 aa - 353 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6778+/-0.000867; mu= 9.6043+/- 0.051
 mean_var=116.2773+/-23.945, 0's: 0 Z-trim(110.1): 145  B-trim: 16 in 1/50
 Lambda= 0.118940
 statistics sampled from 11156 (11335) to 11156 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.348), width:  16
 Scan time:  3.050

The best scores are:                                      opt bits E(32554)
CCDS8246.1 TSKU gene_id:25987|Hs108|chr11          ( 353) 2343 413.0  2e-115
CCDS1448.1 LRRN2 gene_id:10446|Hs108|chr1          ( 713)  337 68.9 1.4e-11


>>CCDS8246.1 TSKU gene_id:25987|Hs108|chr11               (353 aa)
 initn: 2343 init1: 2343 opt: 2343  Z-score: 2185.8  bits: 413.0 E(32554): 2e-115
Smith-Waterman score: 2343; 99.7% identity (100.0% similar) in 353 aa overlap (1-353:1-353)

               10        20        30        40        50        60
pF1KE1 MPWPLLLLLAVSGAQTTRPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIMPVPIPLDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MPWPLLLLLAVSGAQTTRPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIMPVPIPLDT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 AHLDLSSNRLEMVNESVLAGPGYTTLAGLDLSHNLLTSISPTAFSRLRYLESLDLSHNGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 AHLDLSSNRLEMVNESVLAGPGYTTLAGLDLSHNLLTSISPTAFSRLRYLESLDLSHNGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 TALPAESFTSSPLSDVNLSHNQLREVSVSAFTTHSQGRALHVDLSHNLIHRLVPHPTRAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TALPAESFTSSPLSDVNLSHNQLREVSVSAFTTHSQGRALHVDLSHNLIHRLVPHPTRAG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 LPAPTIQSLNLAWNRLHAVPNLRDLPLRYLSLDGNPLAVIGPGAFAGLGGLTHLSLASLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LPAPTIQSLNLAWNRLHAVPNLRDLPLRYLSLDGNPLAVIGPGAFAGLGGLTHLSLASLQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 RLPELAPSGFRELPGLQVLDLSGNPKLNWAGAEVFSGLSSLQELDLSGTNLVPLPEALLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 RLPELAPSGFRELPGLQVLDLSGNPKLNWAGAEVFSGLSSLQELDLSGTNLVPLPEALLL
              250       260       270       280       290       300

              310       320       330       340       350   
pF1KE1 HLPALQSVSVGQDVRCRRLVREGTYPRRPGSSPKVALHCVDTRESAARGPTIL
       :::::::::::::::::::::::::::::::::::::::::::.:::::::::
CCDS82 HLPALQSVSVGQDVRCRRLVREGTYPRRPGSSPKVALHCVDTRDSAARGPTIL
              310       320       330       340       350   

>>CCDS1448.1 LRRN2 gene_id:10446|Hs108|chr1               (713 aa)
 initn: 342 init1: 175 opt: 337  Z-score: 321.2  bits: 68.9 E(32554): 1.4e-11
Smith-Waterman score: 377; 33.2% identity (59.3% similar) in 307 aa overlap (19-315:28-322)

                        10        20        30          40         
pF1KE1          MPWPLLLLLAVSGAQTTRPCFPGCQCEVET-FGLFDSFS-LTRVDCSGLGP
                                  :: : : :...  .   .:.   : :::. :  
CCDS14 MRLLVAPLLLAWVAGATAAVPVVPWHVPCPPQCACQIRPWYTPRSSYREATTVDCNDLFL
               10        20        30        40        50        60

      50        60        70        80         90       100        
pF1KE1 HIMPVPIPLDTAHLDLSSNRLEMVNESVLAGPGY-TTLAGLDLSHNLLTSISPTAFSRLR
         .:  .:  :  : :.:: .  :..: :   :: ..:. ::::.: ...     :  : 
CCDS14 TAVPPALPAGTQTLLLQSNSIVRVDQSEL---GYLANLTELDLSQNSFSDARDCDFHALP
               70        80           90       100       110       

      110       120       130        140       150       160       
pF1KE1 YLESLDLSHNGLTALPAESFTS-SPLSDVNLSHNQLREVSVSAFTTHSQGRALHVDLSHN
        : :: : .: :: :  .::.. . :... :.:::: ...  ::.  :.   ::  :. :
CCDS14 QLLSLHLEENQLTRLEDHSFAGLASLQELYLNHNQLYRIAPRAFSGLSNLLRLH--LNSN
       120       130       140       150       160       170       

       170       180       190         200        210       220    
pF1KE1 LIHRLVPHPTRAGLPAPTIQSLNLAWNRLHAV--PNLRDLP-LRYLSLDGNPLAVIGPGA
       :.. .    .:     :... : .. :.. :.   :.: :  :: : : :  :  :.  :
CCDS14 LLRAI---DSRWFEMLPNLEILMIGGNKVDAILDMNFRPLANLRSLVLAGMNLREISDYA
         180          190       200       210       220       230  

          230         240       250       260       270       280  
pF1KE1 FAGLGGLTHLSL--ASLQRLPELAPSGFRELPGLQVLDLSGNPKLNWAGAEVFSGLSSLQ
       . :: .:  ::.   .: :.:. :   ....:::. :::. :: :. .:   :...  :.
CCDS14 LEGLQSLESLSFYDNQLARVPRRA---LEQVPGLKFLDLNKNP-LQRVGPGDFANMLHLK
            240       250          260       270        280        

            290        300       310       320       330       340 
pF1KE1 ELDLSGTN-LVPLPEALLLHLPALQSVSVGQDVRCRRLVREGTYPRRPGSSPKVALHCVD
       :: :.. . :: . .  :..:: : .... .. :                          
CCDS14 ELGLNNMEELVSIDKFALVNLPELTKLDITNNPRLSFIHPRAFHHLPQMETLMLNNNALS
      290       300       310       320       330       340        

             350                                                   
pF1KE1 TRESAARGPTIL                                                
                                                                   
CCDS14 ALHQQTVESLPNLQEVGLHGNPIRCDCVIRWANATGTRVRFIEPQSTLCAEPPDLQRLPV
      350       360       370       380       390       400        




353 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:04:26 2016 done: Sun Nov  6 15:04:26 2016
 Total Scan time:  3.050 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]