FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1131, 259 aa
  1>>>pF1KE1131 259 - 259 aa - 259 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0163+/-0.000963; mu= 6.9802+/- 0.058
 mean_var=96.8229+/-19.245, 0's: 0 Z-trim(106.9): 19  B-trim: 35 in 1/52
 Lambda= 0.130342
 statistics sampled from 9238 (9241) to 9238 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.284), width:  16
 Scan time:  2.400

The best scores are:                                      opt bits E(32554)
CCDS46011.1 USE1 gene_id:55850|Hs108|chr19         ( 259) 1625 315.6 2.1e-86


>>CCDS46011.1 USE1 gene_id:55850|Hs108|chr19              (259 aa)
 initn: 1625 init1: 1625 opt: 1625  Z-score: 1664.5  bits: 315.6 E(32554): 2.1e-86
Smith-Waterman score: 1625; 99.6% identity (99.6% similar) in 259 aa overlap (1-259:1-259)

               10        20        30        40        50        60
pF1KE1 MAASRLELNLVRLLSRCEAMAAEKRDPDEWRLEKYVGALEDMLQALKVHASKPASEVINE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MAASRLELNLVRLLSRCEAMAAEKRDPDEWRLEKYVGALEDMLQALKVHASKPASEVINE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 YSWKVDFLKGMLQAEKLTSSSEKALANQFLAPGRVPTTARERVPATKTVHLQSRARYTSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 YSWKVDFLKGMLQAEKLTSSSEKALANQFLAPGRVPTTARERVPATKTVHLQSRARYTSE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 MRSELLGTDSAEPEMDVRKRTGVAGSQPVSEKQSAAELDLVLQRHQNLQEKLAEEMLGLA
       ::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::
CCDS46 MRSELLGTDSAEPEMDVRKRTGVAGSQPVSEKQLAAELDLVLQRHQNLQEKLAEEMLGLA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 RSLKTNTLAAQSVIKKDNQTLSHSLKMADQNLEKLKTESERLEQHTQKSVNWLLWAMLII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RSLKTNTLAAQSVIKKDNQTLSHSLKMADQNLEKLKTESERLEQHTQKSVNWLLWAMLII
              190       200       210       220       230       240

              250         
pF1KE1 VCFIFISMILFIRIMPKLK
       :::::::::::::::::::
CCDS46 VCFIFISMILFIRIMPKLK
              250         




259 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 03:34:39 2016 done: Mon Nov  7 03:34:39 2016
 Total Scan time:  2.400 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]