FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1129, 166 aa
  1>>>pF1KE1129 166 - 166 aa - 166 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7903+/-0.000759; mu= 15.7781+/- 0.046
 mean_var=88.0695+/-16.545, 0's: 0 Z-trim(110.8): 38  B-trim: 6 in 1/51
 Lambda= 0.136666
 statistics sampled from 11870 (11904) to 11870 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.366), width:  16
 Scan time:  1.880

The best scores are:                                      opt bits E(32554)
CCDS77420.1 TGFA gene_id:7039|Hs108|chr2           ( 166) 1147 235.2 1.4e-62
CCDS77419.1 TGFA gene_id:7039|Hs108|chr2           ( 165) 1130 231.9 1.4e-61
CCDS1905.1 TGFA gene_id:7039|Hs108|chr2            ( 160) 1026 211.4   2e-55
CCDS46316.1 TGFA gene_id:7039|Hs108|chr2           ( 159) 1009 208.0 2.1e-54


>>CCDS77420.1 TGFA gene_id:7039|Hs108|chr2                (166 aa)
 initn: 1147 init1: 1147 opt: 1147  Z-score: 1237.2  bits: 235.2 E(32554): 1.4e-62
Smith-Waterman score: 1147; 100.0% identity (100.0% similar) in 166 aa overlap (1-166:1-166)

               10        20        30        40        50        60
pF1KE1 MFKIGRGALDLFSELLSFGGIVLAACQALENSTSPLSADPPVAAAVVSHFNDCPDSHTQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MFKIGRGALDLFSELLSFGGIVLAACQALENSTSPLSADPPVAAAVVSHFNDCPDSHTQF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 CFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 CFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVL
               70        80        90       100       110       120

              130       140       150       160      
pF1KE1 IITCVLIHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 IITCVLIHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV
              130       140       150       160      

>>CCDS77419.1 TGFA gene_id:7039|Hs108|chr2                (165 aa)
 initn: 910 init1: 910 opt: 1130  Z-score: 1219.1  bits: 231.9 E(32554): 1.4e-61
Smith-Waterman score: 1130; 99.4% identity (99.4% similar) in 166 aa overlap (1-166:1-165)

               10        20        30        40        50        60
pF1KE1 MFKIGRGALDLFSELLSFGGIVLAACQALENSTSPLSADPPVAAAVVSHFNDCPDSHTQF
       ::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::
CCDS77 MFKIGRGALDLFSELLSFGGIVLAACQALENSTSPLS-DPPVAAAVVSHFNDCPDSHTQF
               10        20        30         40        50         

               70        80        90       100       110       120
pF1KE1 CFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 CFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVL
      60        70        80        90       100       110         

              130       140       150       160      
pF1KE1 IITCVLIHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 IITCVLIHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV
     120       130       140       150       160     

>>CCDS1905.1 TGFA gene_id:7039|Hs108|chr2                 (160 aa)
 initn: 1025 init1: 1025 opt: 1026  Z-score: 1108.4  bits: 211.4 E(32554): 2e-55
Smith-Waterman score: 1026; 94.4% identity (95.0% similar) in 160 aa overlap (7-166:6-160)

               10        20        30        40        50        60
pF1KE1 MFKIGRGALDLFSELLSFGGIVLAACQALENSTSPLSADPPVAAAVVSHFNDCPDSHTQF
             : : ::.      :::::::::::::::::::::::::::::::::::::::::
CCDS19  MVPSAGQLALFAL-----GIVLAACQALENSTSPLSADPPVAAAVVSHFNDCPDSHTQF
                10             20        30        40        50    

               70        80        90       100       110       120
pF1KE1 CFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 CFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVL
           60        70        80        90       100       110    

              130       140       150       160      
pF1KE1 IITCVLIHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 IITCVLIHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV
          120       130       140       150       160

>>CCDS46316.1 TGFA gene_id:7039|Hs108|chr2                (159 aa)
 initn: 910 init1: 910 opt: 1009  Z-score: 1090.3  bits: 208.0 E(32554): 2.1e-54
Smith-Waterman score: 1009; 93.8% identity (94.4% similar) in 160 aa overlap (7-166:6-159)

               10        20        30        40        50        60
pF1KE1 MFKIGRGALDLFSELLSFGGIVLAACQALENSTSPLSADPPVAAAVVSHFNDCPDSHTQF
             : : ::.      :::::::::::::::::: ::::::::::::::::::::::
CCDS46  MVPSAGQLALFAL-----GIVLAACQALENSTSPLS-DPPVAAAVVSHFNDCPDSHTQF
                10             20        30         40        50   

               70        80        90       100       110       120
pF1KE1 CFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 CFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLAVVAASQKKQAITALVVVSIVALAVL
            60        70        80        90       100       110   

              130       140       150       160      
pF1KE1 IITCVLIHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 IITCVLIHCCQVRKHCEWCRALICRHEKPSALLKGRTACCHSETVV
           120       130       140       150         




166 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:59:52 2016 done: Sun Nov  6 21:59:53 2016
 Total Scan time:  1.880 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]