Result of FASTA (ccds) for
pFN21AE1128
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1128, 165 aa
1>>>pF1KE1128 165 - 165 aa - 165 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0377+/-0.000712; mu= 14.0355+/- 0.043
mean_var=69.0691+/-13.623, 0's: 0 Z-trim(110.1): 54 B-trim: 0 in 0/51
Lambda= 0.154324
statistics sampled from 11335 (11391) to 11335 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.35), width: 16
Scan time: 1.890
The best scores are: opt bits E(32554)
CCDS13714.1 UBE2G2 gene_id:7327|Hs108|chr21 ( 165) 1138 261.6 1.6e-70
CCDS33586.1 UBE2G2 gene_id:7327|Hs108|chr21 ( 137) 957 221.2 1.9e-58
CCDS32532.1 UBE2G1 gene_id:7326|Hs108|chr17 ( 170) 587 138.9 1.4e-33
CCDS6546.1 UBE2R2 gene_id:54926|Hs108|chr9 ( 238) 516 123.2 1e-28
CCDS12030.1 CDC34 gene_id:997|Hs108|chr19 ( 236) 504 120.6 6.5e-28
CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 ( 152) 313 77.9 2.9e-15
CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX ( 152) 307 76.6 7.4e-15
CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 147) 302 75.4 1.6e-14
CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 ( 147) 299 74.8 2.5e-14
CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 147) 298 74.5 2.9e-14
CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 147) 297 74.3 3.4e-14
CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 148) 297 74.3 3.4e-14
CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 149) 279 70.3 5.5e-13
CCDS10433.1 UBE2I gene_id:7329|Hs108|chr16 ( 158) 265 67.2 5e-12
CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 ( 207) 260 66.2 1.3e-11
CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 ( 201) 259 66.0 1.5e-11
CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 193) 252 64.4 4.3e-11
>>CCDS13714.1 UBE2G2 gene_id:7327|Hs108|chr21 (165 aa)
initn: 1138 init1: 1138 opt: 1138 Z-score: 1379.7 bits: 261.6 E(32554): 1.6e-70
Smith-Waterman score: 1138; 100.0% identity (100.0% similar) in 165 aa overlap (1-165:1-165)
10 20 30 40 50 60
pF1KE1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKIL
70 80 90 100 110 120
130 140 150 160
pF1KE1 LSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLGL
:::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLGL
130 140 150 160
>>CCDS33586.1 UBE2G2 gene_id:7327|Hs108|chr21 (137 aa)
initn: 957 init1: 957 opt: 957 Z-score: 1163.0 bits: 221.2 E(32554): 1.9e-58
Smith-Waterman score: 957; 100.0% identity (100.0% similar) in 137 aa overlap (29-165:1-137)
10 20 30 40 50 60
pF1KE1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSF
::::::::::::::::::::::::::::::::
CCDS33 MNEENFFEWEALIMGPEDTCFEFGVFPAILSF
10 20 30
70 80 90 100 110 120
pF1KE1 PLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKIL
40 50 60 70 80 90
130 140 150 160
pF1KE1 LSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLGL
:::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLGL
100 110 120 130
>>CCDS32532.1 UBE2G1 gene_id:7326|Hs108|chr17 (170 aa)
initn: 568 init1: 568 opt: 587 Z-score: 716.5 bits: 138.9 E(32554): 1.4e-33
Smith-Waterman score: 587; 53.2% identity (78.5% similar) in 158 aa overlap (6-162:10-164)
10 20 30 40 50
pF1KE1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPA
:.: .:: :. :: ::. :: ........::.::.:: :: .: ::: :
CCDS32 MTELQSALLLRRQLAE---LNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKA
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 ILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSV
:.:: :::: ::::.: :..:::. .: ::::::: ::.: .:::. ::: :...:
CCDS32 HLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTV
60 70 80 90 100 110
120 130 140 150 160
pF1KE1 EKILLSVVSMLAEPNDESGANVDASKMWRDDRE-QFYKIAKQIVQKSLGL
: :..::.::::.:: .: :::::.: ::.::. .: . . . :.::
CCDS32 ETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKSQETAFE
120 130 140 150 160 170
>>CCDS6546.1 UBE2R2 gene_id:54926|Hs108|chr9 (238 aa)
initn: 529 init1: 495 opt: 516 Z-score: 629.0 bits: 123.2 E(32554): 1e-28
Smith-Waterman score: 516; 50.0% identity (70.4% similar) in 162 aa overlap (4-158:8-169)
10 20 30 40 50
pF1KE1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPA
.. : :: : :.: .: ::. ..: ....::. :.:: .: .: : : :
CCDS65 MAQQQMTSSQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 ILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSV
..::.::: ::: .:: .:.::::: .: ::::::: : :::.. : .:::.:.:.:
CCDS65 HIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNV
70 80 90 100 110 120
120 130 140 150 160
pF1KE1 EKILLSVVSMLAEPNDESGANVDASKM---WRD----DREQFYKIAKQIVQKSLGL
. :::::.:.: ::: : :::::: : ::: :.: : ::.
CCDS65 RTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGKDKEYAEIIRKQVSATKAEAEKDG
130 140 150 160 170 180
CCDS65 VKVPTTLAEYCIKTKVPSNDNSSDLLYDDLYDDDIDDEDEEEEDADCYDDDDSGNEES
190 200 210 220 230
>>CCDS12030.1 CDC34 gene_id:997|Hs108|chr19 (236 aa)
initn: 499 init1: 465 opt: 504 Z-score: 614.6 bits: 120.6 E(32554): 6.5e-28
Smith-Waterman score: 504; 48.2% identity (69.9% similar) in 166 aa overlap (1-159:5-170)
10 20 30 40 50
pF1KE1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPA
.. .. : :. : : : .: ::. . ..: ....::. :.:: .: .: : : :
CCDS12 MARPLVPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 ILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSV
:.::.::: ::: .:: .:.::::: : ::::::: : :::.. : .:::.:.:.:
CCDS12 RLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNV
70 80 90 100 110 120
120 130 140 150 160
pF1KE1 EKILLSVVSMLAEPNDESGANVDASKM---WRD----DREQFYKIAKQIVQKSLGL
. :::::.:.: ::: : :::::: : :.. ::: : ::..
CCDS12 RTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTKVDAERDG
130 140 150 160 170 180
CCDS12 VKVPTTLAEYCVKTKAPAPDEGSDLFYDDYYEDGEVEEEADSCFGDDEDDSGTEES
190 200 210 220 230
>>CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 (152 aa)
initn: 391 init1: 203 opt: 313 Z-score: 387.5 bits: 77.9 E(32554): 2.9e-15
Smith-Waterman score: 423; 38.9% identity (71.0% similar) in 162 aa overlap (1-162:1-148)
10 20 30 40 50 60
pF1KE1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSF
:. : .::: ..:.: .:: :. ..: .:.:...:.:.:.::: : :: :.: .. :
CCDS41 MSTPARRRLMRDFKRLQEDPPVGVSGAP-SENNIMQWNAVIFGPEGTPFEDGTFKLVIEF
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 PLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKIL
.:: .:: .:: .:::::.: :: .:..::. .::::. .: .::
CCDS41 SEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQ-------------NRWSPTYDVSSIL
60 70 80 90 100
130 140 150 160
pF1KE1 LSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLGL
:. :.: ::: .: :: .:........... : .. ::..:
CCDS41 TSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSWNDS
110 120 130 140 150
>>CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX (152 aa)
initn: 389 init1: 199 opt: 307 Z-score: 380.2 bits: 76.6 E(32554): 7.4e-15
Smith-Waterman score: 416; 38.9% identity (70.4% similar) in 162 aa overlap (1-162:1-148)
10 20 30 40 50 60
pF1KE1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSF
:. : .::: ..:.: .:: :. ..: .:.:.. :.:.:.::: : :: :.: . :
CCDS14 MSTPARRRLMRDFKRLQEDPPAGVSGAP-SENNIMVWNAVIFGPEGTPFEDGTFKLTIEF
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 PLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKIL
.:: .:: .::. .:::::.: :: .:..::. .::::. .: .::
CCDS14 TEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQ-------------NRWSPTYDVSSIL
60 70 80 90 100
130 140 150 160
pF1KE1 LSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLGL
:. :.: ::: .: :: .:........... : .. ::..:
CCDS14 TSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSWRDC
110 120 130 140 150
>>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 (147 aa)
initn: 402 init1: 211 opt: 302 Z-score: 374.4 bits: 75.4 E(32554): 1.6e-14
Smith-Waterman score: 408; 36.9% identity (68.8% similar) in 157 aa overlap (5-161:2-144)
10 20 30 40 50 60
pF1KE1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSF
::::.. : ..: .:: :::.... .:.:.: :::: :. .. ::: . :
CCDS72 MALKRIQKELSDLQRDPPAHCSAGPVGDD-LFHWQATIMGPPDSAYQGGVFFLTVHF
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 PLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKIL
: :::..:::. :: ...:::: .: .:..::.. .:::. .: :.:
CCDS72 PTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRS-------------QWSPALTVSKVL
60 70 80 90 100
130 140 150 160
pF1KE1 LSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLGL
::. :.: .:: .. : ......:.:.. . :.. .::
CCDS72 LSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM
110 120 130 140
>>CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 (147 aa)
initn: 396 init1: 209 opt: 299 Z-score: 370.8 bits: 74.8 E(32554): 2.5e-14
Smith-Waterman score: 402; 36.9% identity (68.2% similar) in 157 aa overlap (5-161:2-144)
10 20 30 40 50 60
pF1KE1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSF
::::.. : .: .:: :::.... .:.:.: ::::.:. .. ::: . :
CCDS54 MALKRIQKELTDLQRDPPAQCSAGPVGDD-LFHWQATIMGPNDSPYQGGVFFLTIHF
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 PLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKIL
: :::..:::. :: ...:::: .: .:..::.. .:::. .: :.:
CCDS54 PTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRS-------------QWSPALTVSKVL
60 70 80 90 100
130 140 150 160
pF1KE1 LSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLGL
::. :.: .:: .. . .. .. :::.. ..:.. .::
CCDS54 LSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKYAM
110 120 130 140
>>CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 (147 aa)
initn: 407 init1: 208 opt: 298 Z-score: 369.6 bits: 74.5 E(32554): 2.9e-14
Smith-Waterman score: 410; 36.9% identity (69.4% similar) in 157 aa overlap (5-161:2-144)
10 20 30 40 50 60
pF1KE1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSF
::::. : ..:. .:: :::.... .:.:.: ::::.:. .. ::: . :
CCDS43 MALKRIHKELNDLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVFFLTIHF
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 PLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKIL
: :::..:::. :: ...:::: .: .:..::.. .:::. .. :.:
CCDS43 PTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS-------------QWSPALTISKVL
60 70 80 90 100
130 140 150 160
pF1KE1 LSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLGL
::. :.: .:: .. . ..... :::.. .::.. .::
CCDS43 LSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM
110 120 130 140
165 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 12:57:32 2016 done: Sun Nov 6 12:57:33 2016
Total Scan time: 1.890 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]