Result of FASTA (omim) for
pFN21AE1127
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1127, 118 aa
1>>>pF1KE1127 118 - 118 aa - 118 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8266+/-0.00026; mu= 12.9256+/- 0.016
mean_var=57.8227+/-11.696, 0's: 0 Z-trim(119.9): 17 B-trim: 109 in 1/55
Lambda= 0.168665
statistics sampled from 34541 (34560) to 34541 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.788), E-opt: 0.2 (0.405), width: 16
Scan time: 5.130
The best scores are: opt bits E(85289)
XP_005250013 (OMIM: 613914) PREDICTED: zinc finger ( 659) 731 185.5 9.6e-47
XP_005250012 (OMIM: 613914) PREDICTED: zinc finger ( 660) 731 185.5 9.6e-47
NP_689770 (OMIM: 613914) zinc finger protein 746 i ( 644) 671 170.9 2.3e-42
NP_001156946 (OMIM: 613914) zinc finger protein 74 ( 645) 671 170.9 2.3e-42
XP_005250014 (OMIM: 613914) PREDICTED: zinc finger ( 647) 654 166.7 4.1e-41
NP_001290410 (OMIM: 603397) zinc finger protein 28 ( 463) 600 153.5 2.8e-37
NP_003566 (OMIM: 603397) zinc finger protein 282 i ( 671) 600 153.6 3.9e-37
XP_006716214 (OMIM: 603397) PREDICTED: zinc finger ( 672) 600 153.6 3.9e-37
XP_011514140 (OMIM: 613914) PREDICTED: zinc finger ( 632) 594 152.1 1e-36
XP_016868136 (OMIM: 602386) PREDICTED: zinc finger ( 492) 576 147.7 1.7e-35
XP_016868135 (OMIM: 602386) PREDICTED: zinc finger ( 494) 576 147.7 1.7e-35
NP_036388 (OMIM: 602386) zinc finger protein 212 [ ( 495) 576 147.7 1.7e-35
XP_005250112 (OMIM: 602386) PREDICTED: zinc finger ( 535) 576 147.7 1.8e-35
XP_011514883 (OMIM: 602386) PREDICTED: zinc finger ( 440) 511 131.8 9e-31
XP_011514884 (OMIM: 602386) PREDICTED: zinc finger ( 441) 511 131.8 9e-31
XP_016868137 (OMIM: 602386) PREDICTED: zinc finger ( 441) 511 131.8 9e-31
>>XP_005250013 (OMIM: 613914) PREDICTED: zinc finger pro (659 aa)
initn: 731 init1: 731 opt: 731 Z-score: 960.2 bits: 185.5 E(85289): 9.6e-47
Smith-Waterman score: 731; 94.9% identity (99.2% similar) in 118 aa overlap (1-118:1-118)
10 20 30 40 50 60
pF1KE1 MEEAAAAPISPWTMAATIQAMERKIESQAAHLLSLEGQTGMAEKKLADCEKTAVEFGNQL
: ::.:::::::::::::::::::::::::.::::::.::::::::::::::::::::::
XP_005 MAEAVAAPISPWTMAATIQAMERKIESQAARLLSLEGRTGMAEKKLADCEKTAVEFGNQL
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 EGKWAVLGTLLQEYGLLQRRLENVENLLHNRNFWILRLPPGSKGESPKVPMTFDDVAV
::::::::::::::::::::::::::::.:::::::::::::::::::::.:::::::
XP_005 EGKWAVLGTLLQEYGLLQRRLENVENLLRNRNFWILRLPPGSKGESPKVPVTFDDVAVYF
70 80 90 100 110 120
XP_005 SEQEWGKLEDWQKELYKHVMRGNYETLVSLDYAISKPEVLSQIEQGKEPCNWRRPGPKIP
130 140 150 160 170 180
>>XP_005250012 (OMIM: 613914) PREDICTED: zinc finger pro (660 aa)
initn: 731 init1: 731 opt: 731 Z-score: 960.2 bits: 185.5 E(85289): 9.6e-47
Smith-Waterman score: 731; 94.9% identity (99.2% similar) in 118 aa overlap (1-118:1-118)
10 20 30 40 50 60
pF1KE1 MEEAAAAPISPWTMAATIQAMERKIESQAAHLLSLEGQTGMAEKKLADCEKTAVEFGNQL
: ::.:::::::::::::::::::::::::.::::::.::::::::::::::::::::::
XP_005 MAEAVAAPISPWTMAATIQAMERKIESQAARLLSLEGRTGMAEKKLADCEKTAVEFGNQL
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 EGKWAVLGTLLQEYGLLQRRLENVENLLHNRNFWILRLPPGSKGESPKVPMTFDDVAV
::::::::::::::::::::::::::::.:::::::::::::::::::::.:::::::
XP_005 EGKWAVLGTLLQEYGLLQRRLENVENLLRNRNFWILRLPPGSKGESPKVPVTFDDVAVYF
70 80 90 100 110 120
XP_005 SEQEWGKLEDWQKELYKHVMRGNYETLVSLDYAISKPEVLSQIEQGKEPCNWRRPGPKIP
130 140 150 160 170 180
>>NP_689770 (OMIM: 613914) zinc finger protein 746 isofo (644 aa)
initn: 671 init1: 671 opt: 671 Z-score: 881.4 bits: 170.9 E(85289): 2.3e-42
Smith-Waterman score: 671; 95.4% identity (99.1% similar) in 108 aa overlap (1-108:1-108)
10 20 30 40 50 60
pF1KE1 MEEAAAAPISPWTMAATIQAMERKIESQAAHLLSLEGQTGMAEKKLADCEKTAVEFGNQL
: ::.:::::::::::::::::::::::::.::::::.::::::::::::::::::::::
NP_689 MAEAVAAPISPWTMAATIQAMERKIESQAARLLSLEGRTGMAEKKLADCEKTAVEFGNQL
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 EGKWAVLGTLLQEYGLLQRRLENVENLLHNRNFWILRLPPGSKGESPKVPMTFDDVAV
::::::::::::::::::::::::::::.:::::::::::::::::::
NP_689 EGKWAVLGTLLQEYGLLQRRLENVENLLRNRNFWILRLPPGSKGESPKEWGKLEDWQKEL
70 80 90 100 110 120
NP_689 YKHVMRGNYETLVSLDYAISKPEVLSQIEQGKEPCNWRRPGPKIPDVPVDPSPGSGPPVP
130 140 150 160 170 180
>>NP_001156946 (OMIM: 613914) zinc finger protein 746 is (645 aa)
initn: 671 init1: 671 opt: 671 Z-score: 881.4 bits: 170.9 E(85289): 2.3e-42
Smith-Waterman score: 671; 95.4% identity (99.1% similar) in 108 aa overlap (1-108:1-108)
10 20 30 40 50 60
pF1KE1 MEEAAAAPISPWTMAATIQAMERKIESQAAHLLSLEGQTGMAEKKLADCEKTAVEFGNQL
: ::.:::::::::::::::::::::::::.::::::.::::::::::::::::::::::
NP_001 MAEAVAAPISPWTMAATIQAMERKIESQAARLLSLEGRTGMAEKKLADCEKTAVEFGNQL
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 EGKWAVLGTLLQEYGLLQRRLENVENLLHNRNFWILRLPPGSKGESPKVPMTFDDVAV
::::::::::::::::::::::::::::.:::::::::::::::::::
NP_001 EGKWAVLGTLLQEYGLLQRRLENVENLLRNRNFWILRLPPGSKGESPKEWGKLEDWQKEL
70 80 90 100 110 120
NP_001 YKHVMRGNYETLVSLDYAISKPEVLSQIEQGKEPCNWRRPGPKIPDVPVDPSPGSGPPVP
130 140 150 160 170 180
>>XP_005250014 (OMIM: 613914) PREDICTED: zinc finger pro (647 aa)
initn: 654 init1: 654 opt: 654 Z-score: 859.0 bits: 166.7 E(85289): 4.1e-41
Smith-Waterman score: 654; 96.2% identity (100.0% similar) in 105 aa overlap (14-118:1-105)
10 20 30 40 50 60
pF1KE1 MEEAAAAPISPWTMAATIQAMERKIESQAAHLLSLEGQTGMAEKKLADCEKTAVEFGNQL
:::::::::::::::::.::::::.::::::::::::::::::::::
XP_005 MAATIQAMERKIESQAARLLSLEGRTGMAEKKLADCEKTAVEFGNQL
10 20 30 40
70 80 90 100 110
pF1KE1 EGKWAVLGTLLQEYGLLQRRLENVENLLHNRNFWILRLPPGSKGESPKVPMTFDDVAV
::::::::::::::::::::::::::::.:::::::::::::::::::::.:::::::
XP_005 EGKWAVLGTLLQEYGLLQRRLENVENLLRNRNFWILRLPPGSKGESPKVPVTFDDVAVYF
50 60 70 80 90 100
XP_005 SEQEWGKLEDWQKELYKHVMRGNYETLVSLDYAISKPEVLSQIEQGKEPCNWRRPGPKIP
110 120 130 140 150 160
>>NP_001290410 (OMIM: 603397) zinc finger protein 282 is (463 aa)
initn: 600 init1: 600 opt: 600 Z-score: 790.1 bits: 153.5 E(85289): 2.8e-37
Smith-Waterman score: 600; 78.6% identity (96.4% similar) in 112 aa overlap (7-118:94-205)
10 20 30
pF1KE1 MEEAAAAPISPWTMAATIQAMERKIESQAAHLLSLE
: :: ::..:.:::.:::...::..::.::
NP_001 RRPMPFQFPPFPDRAPVFPDRMMREPQLPTAEISLWTVVAAIQAVERKVDAQASQLLNLE
70 80 90 100 110 120
40 50 60 70 80 90
pF1KE1 GQTGMAEKKLADCEKTAVEFGNQLEGKWAVLGTLLQEYGLLQRRLENVENLLHNRNFWIL
:.:: :::::::::::::::::..:.:::::::::::::::::::::.::::.:::::.:
NP_001 GRTGTAEKKLADCEKTAVEFGNHMESKWAVLGTLLQEYGLLQRRLENLENLLRNRNFWVL
130 140 150 160 170 180
100 110
pF1KE1 RLPPGSKGESPKVPMTFDDVAV
:::::::::.::::.:: :.::
NP_001 RLPPGSKGEAPKVPVTFVDIAVYFSEDEWKNLDEWQKELYNNLVKENYKTLMSLDAEGSV
190 200 210 220 230 240
>>NP_003566 (OMIM: 603397) zinc finger protein 282 isofo (671 aa)
initn: 600 init1: 600 opt: 600 Z-score: 787.8 bits: 153.6 E(85289): 3.9e-37
Smith-Waterman score: 600; 78.6% identity (96.4% similar) in 112 aa overlap (7-118:94-205)
10 20 30
pF1KE1 MEEAAAAPISPWTMAATIQAMERKIESQAAHLLSLE
: :: ::..:.:::.:::...::..::.::
NP_003 RRPMPFQFPPFPDRAPVFPDRMMREPQLPTAEISLWTVVAAIQAVERKVDAQASQLLNLE
70 80 90 100 110 120
40 50 60 70 80 90
pF1KE1 GQTGMAEKKLADCEKTAVEFGNQLEGKWAVLGTLLQEYGLLQRRLENVENLLHNRNFWIL
:.:: :::::::::::::::::..:.:::::::::::::::::::::.::::.:::::.:
NP_003 GRTGTAEKKLADCEKTAVEFGNHMESKWAVLGTLLQEYGLLQRRLENLENLLRNRNFWVL
130 140 150 160 170 180
100 110
pF1KE1 RLPPGSKGESPKVPMTFDDVAV
:::::::::.::::.:: :.::
NP_003 RLPPGSKGEAPKVPVTFVDIAVYFSEDEWKNLDEWQKELYNNLVKENYKTLMSLDAEGSV
190 200 210 220 230 240
>>XP_006716214 (OMIM: 603397) PREDICTED: zinc finger pro (672 aa)
initn: 600 init1: 600 opt: 600 Z-score: 787.8 bits: 153.6 E(85289): 3.9e-37
Smith-Waterman score: 600; 78.6% identity (96.4% similar) in 112 aa overlap (7-118:94-205)
10 20 30
pF1KE1 MEEAAAAPISPWTMAATIQAMERKIESQAAHLLSLE
: :: ::..:.:::.:::...::..::.::
XP_006 RRPMPFQFPPFPDRAPVFPDRMMREPQLPTAEISLWTVVAAIQAVERKVDAQASQLLNLE
70 80 90 100 110 120
40 50 60 70 80 90
pF1KE1 GQTGMAEKKLADCEKTAVEFGNQLEGKWAVLGTLLQEYGLLQRRLENVENLLHNRNFWIL
:.:: :::::::::::::::::..:.:::::::::::::::::::::.::::.:::::.:
XP_006 GRTGTAEKKLADCEKTAVEFGNHMESKWAVLGTLLQEYGLLQRRLENLENLLRNRNFWVL
130 140 150 160 170 180
100 110
pF1KE1 RLPPGSKGESPKVPMTFDDVAV
:::::::::.::::.:: :.::
XP_006 RLPPGSKGEAPKVPVTFVDIAVYFSEDEWKNLDEWQKELYNNLVKENYKTLMSLDAEGSV
190 200 210 220 230 240
>>XP_011514140 (OMIM: 613914) PREDICTED: zinc finger pro (632 aa)
initn: 594 init1: 594 opt: 594 Z-score: 780.3 bits: 152.1 E(85289): 1e-36
Smith-Waterman score: 594; 96.8% identity (100.0% similar) in 95 aa overlap (14-108:1-95)
10 20 30 40 50 60
pF1KE1 MEEAAAAPISPWTMAATIQAMERKIESQAAHLLSLEGQTGMAEKKLADCEKTAVEFGNQL
:::::::::::::::::.::::::.::::::::::::::::::::::
XP_011 MAATIQAMERKIESQAARLLSLEGRTGMAEKKLADCEKTAVEFGNQL
10 20 30 40
70 80 90 100 110
pF1KE1 EGKWAVLGTLLQEYGLLQRRLENVENLLHNRNFWILRLPPGSKGESPKVPMTFDDVAV
::::::::::::::::::::::::::::.:::::::::::::::::::
XP_011 EGKWAVLGTLLQEYGLLQRRLENVENLLRNRNFWILRLPPGSKGESPKEWGKLEDWQKEL
50 60 70 80 90 100
XP_011 YKHVMRGNYETLVSLDYAISKPEVLSQIEQGKEPCNWRRPGPKIPDVPVDPSPGSGPPVP
110 120 130 140 150 160
>>XP_016868136 (OMIM: 602386) PREDICTED: zinc finger pro (492 aa)
initn: 576 init1: 576 opt: 576 Z-score: 758.2 bits: 147.7 E(85289): 1.7e-35
Smith-Waterman score: 576; 80.0% identity (93.6% similar) in 110 aa overlap (9-118:36-145)
10 20 30
pF1KE1 MEEAAAAPISPWTMAATIQAMERKIESQAAHLLSLEGQ
:: ::..:.:::.:.:.:::::.: ::::.
XP_016 KMRKRRSTPLTSSTLPSQATEKSSYFQTTEISLWTVVAAIQAVEKKMESQAARLQSLEGR
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE1 TGMAEKKLADCEKTAVEFGNQLEGKWAVLGTLLQEYGLLQRRLENVENLLHNRNFWILRL
:: :::::::::: ::::::::::::::::::::::::::::::::::::.:::::::::
XP_016 TGTAEKKLADCEKMAVEFGNQLEGKWAVLGTLLQEYGLLQRRLENVENLLRNRNFWILRL
70 80 90 100 110 120
100 110
pF1KE1 PPGSKGESPKVPMTFDDVAV
:::::::.::: .... .:
XP_016 PPGSKGEAPKVSRSLENDGVCFTEQEWENLEDWQKELYRNVMESNYETLVSLKVLGQTEG
130 140 150 160 170 180
118 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 22:07:52 2016 done: Sun Nov 6 22:07:53 2016
Total Scan time: 5.130 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]