FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1119, 328 aa
  1>>>pF1KE1119 328 - 328 aa - 328 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3700+/-0.000942; mu= 15.0528+/- 0.056
 mean_var=58.2856+/-11.509, 0's: 0 Z-trim(103.6): 20  B-trim: 8 in 1/50
 Lambda= 0.167994
 statistics sampled from 7482 (7487) to 7482 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.612), E-opt: 0.2 (0.23), width:  16
 Scan time:  2.120

The best scores are:                                      opt bits E(32554)
CCDS10590.1 ERI2 gene_id:112479|Hs108|chr16        ( 328) 2240 551.4 3.7e-157
CCDS45436.1 ERI2 gene_id:112479|Hs108|chr16        ( 691) 1667 412.6 4.6e-115
CCDS30696.1 ERI3 gene_id:79033|Hs108|chr1          ( 337)  273 74.6 1.2e-13
CCDS5972.1 ERI1 gene_id:90459|Hs108|chr8           ( 349)  261 71.7 9.4e-13


>>CCDS10590.1 ERI2 gene_id:112479|Hs108|chr16             (328 aa)
 initn: 2240 init1: 2240 opt: 2240  Z-score: 2935.0  bits: 551.4 E(32554): 3.7e-157
Smith-Waterman score: 2240; 99.7% identity (100.0% similar) in 328 aa overlap (1-328:1-328)

               10        20        30        40        50        60
pF1KE1 MATKRLARQLGLIRRKSIAPANGNLGRSKSKQLFDYLIVIDFESTCWNDGKHHHSQEIIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MATKRLARQLGLIRRKSIAPANGNLGRSKSKQLFDYLIVIDFESTCWNDGKHHHSQEIIE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMELTGIKQAQVDEGVPLKICLSQFCKW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMELTGIKQAQVDEGVPLKICLSQFCKW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 IHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 DLRATYKLFYRRKPKGLSGALQEVGIEFSGREHSGLDDSRNTALLAWKMIRDGCVMKITR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DLRATYKLFYRRKPKGLSGALQEVGIEFSGREHSGLDDSRNTALLAWKMIRDGCVMKITR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 SLNKGPFLLPSWTWNSDLASGDQHAFLKQEFGCGTYRTLLQKPNMSKQEKGNILWLTMVW
       :::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
CCDS10 SLNKGPFLLPSWTWNSDLASGDQHAFLQQEFGCGTYRTLLQKPNMSKQEKGNILWLTMVW
              250       260       270       280       290       300

              310       320        
pF1KE1 LSLACLQRKNYNDCMLNTASQTVTTEKF
       ::::::::::::::::::::::::::::
CCDS10 LSLACLQRKNYNDCMLNTASQTVTTEKF
              310       320        

>>CCDS45436.1 ERI2 gene_id:112479|Hs108|chr16             (691 aa)
 initn: 1661 init1: 1661 opt: 1667  Z-score: 2179.3  bits: 412.6 E(32554): 4.6e-115
Smith-Waterman score: 1667; 86.4% identity (91.5% similar) in 294 aa overlap (1-294:1-287)

               10        20        30        40        50        60
pF1KE1 MATKRLARQLGLIRRKSIAPANGNLGRSKSKQLFDYLIVIDFESTCWNDGKHHHSQEIIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MATKRLARQLGLIRRKSIAPANGNLGRSKSKQLFDYLIVIDFESTCWNDGKHHHSQEIIE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMELTGIKQAQVDEGVPLKICLSQFCKW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMELTGIKQAQVDEGVPLKICLSQFCKW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 IHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 DLRATYKLFYRRKPKGLSGALQEVGIEFSGREHSGLDDSRNTALLAWKMIRDGCVMKITR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DLRATYKLFYRRKPKGLSGALQEVGIEFSGREHSGLDDSRNTALLAWKMIRDGCVMKITR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 SLNKGPFLLPSWTWNSDLASGDQHAFLKQEFGCGTYRTLLQKPNMSKQEKGNILWLTMVW
       ::::    .:.    : :: . .   ...  .:.     .: :.. ..:  ::.      
CCDS45 SLNK----VPTKKNFSILARNLNTIQVEEMSACNIS---IQGPSIYNKEPKNIINPHEKV
                  250       260       270          280       290   

              310       320                                        
pF1KE1 LSLACLQRKNYNDCMLNTASQTVTTEKF                                
                                                                   
CCDS45 QMKSICANSPIKAQQDQLQVKNNIKASLHNVKSSLPLFNTKSSTSVGQLQSPTLNSPIYM
           300       310       320       330       340       350   

>>CCDS30696.1 ERI3 gene_id:79033|Hs108|chr1               (337 aa)
 initn: 400 init1: 203 opt: 273  Z-score: 358.4  bits: 74.6 E(32554): 1.2e-13
Smith-Waterman score: 418; 38.1% identity (60.0% similar) in 210 aa overlap (32-239:141-333)

              10        20        30        40        50        60 
pF1KE1 ATKRLARQLGLIRRKSIAPANGNLGRSKSKQLFDYLIVIDFESTCWNDGKHHHSQEIIEF
                                     : . :..:.:::.::  :  . : ::::::
CCDS30 GVPEFCSISTRKLAAHGFGASMAAMVSFPPQRYHYFLVLDFEATC--DKPQIHPQEIIEF
              120       130       140       150         160        

              70        80        90       100        110       120
pF1KE1 PAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMELTGIKQAQVDEGVP-LKICLSQFCKW
       : . ::  : .:.: :. ::::  :: :. :: ::::: ::.:: : : :.  : .  .:
CCDS30 PILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVD-GQPSLQQVLERVDEW
      170       180       190       200       210        220       

              130       140       150       160       170       180
pF1KE1 IHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWI
       . :           :. .:... .    ::: .:::: : :  .:.   :    ....::
CCDS30 MAK----------EGLLDPNVKSI----FVTCGDWDLKVMLPGQCQYLGLPVADYFKQWI
       230                 240           250       260       270   

              190        200       210       220       230         
pF1KE1 DLRATYKLFYRRKPK-GLSGALQEVGIEFSGREHSGLDDSRNTALLAWKMIRDGCVMKIT
       .:. .:.. .   :: ::    . ....  :: :::.:: .: : .   .   : ..: :
CCDS30 NLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQT
           280       290       300       310       320       330   

     240       250       260       270       280       290         
pF1KE1 RSLNKGPFLLPSWTWNSDLASGDQHAFLKQEFGCGTYRTLLQKPNMSKQEKGNILWLTMV
                                                                   
CCDS30 SKPF                                                        
                                                                   

>>CCDS5972.1 ERI1 gene_id:90459|Hs108|chr8                (349 aa)
 initn: 496 init1: 261 opt: 261  Z-score: 342.4  bits: 71.7 E(32554): 9.4e-13
Smith-Waterman score: 479; 35.5% identity (67.7% similar) in 217 aa overlap (34-248:127-328)

            10        20        30        40        50        60   
pF1KE1 KRLARQLGLIRRKSIAPANGNLGRSKSKQLFDYLIVIDFESTCWNDGKHHHSQEIIEFPA
                                     .::. .::::.:: . .  .  .::::::.
CCDS59 GVKDVLKKRLKNYYKKQKLMLKESNFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPV
        100       110       120       130       140       150      

            70        80        90       100       110       120   
pF1KE1 VLLNTSTGQIDSEFQAYVQPQEHPILSEFCMELTGIKQAQVDEGVPLKICLSQFCKWIHK
       ::::: : .:.. :: ::.:. .  ::.::. :::: : :::..  .   :..   :. :
CCDS59 VLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDWM-K
        160       170       180       190       200       210      

           130       140       150       160       170       180   
pF1KE1 IQQQKNIIFATGISEPSASEVKLCAFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWIDLR
       ...              ... :  ...: ..::..  :. .:. ..:  : : ..::..:
CCDS59 LKEL-------------GTKYKY-SLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIR
                      220        230       240       250       260 

           190         200       210       220       230       240 
pF1KE1 ATYKLFYR--RKPKGLSGALQEVGIEFSGREHSGLDDSRNTALLAWKMIRDGCVMKITRS
        .:  ::.  :.   :.  :...:....:: : :::::.: : .: .:..::: ..:...
CCDS59 KSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDGCELRINEK
             270       280       290       300       310       320 

             250       260       270       280       290       300 
pF1KE1 LNKGPFLLPSWTWNSDLASGDQHAFLKQEFGCGTYRTLLQKPNMSKQEKGNILWLTMVWL
       .. : ..                                                     
CCDS59 MHAGQLMSVSSSLPIEGTPPPQMPHFRK                                
             330       340                                         




328 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:56:24 2016 done: Mon Nov  7 01:56:24 2016
 Total Scan time:  2.120 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]