Result of FASTA (ccds) for
pFN21AE1117
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1117, 316 aa
1>>>pF1KE1117 316 - 316 aa - 316 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3530+/-0.000793; mu= 16.4830+/- 0.048
mean_var=93.5179+/-19.547, 0's: 0 Z-trim(109.9): 102 B-trim: 405 in 1/52
Lambda= 0.132625
statistics sampled from 11094 (11213) to 11094 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.344), width: 16
Scan time: 2.680
The best scores are: opt bits E(32554)
CCDS13857.2 RFPL1 gene_id:5988|Hs108|chr22 ( 317) 2164 424.0 7.6e-119
CCDS43011.1 RFPL3 gene_id:10738|Hs108|chr22 ( 317) 1966 386.1 1.9e-107
CCDS46694.1 RFPL2 gene_id:10739|Hs108|chr22 ( 317) 1930 379.2 2.3e-105
CCDS13904.1 RFPL3 gene_id:10738|Hs108|chr22 ( 288) 1779 350.3 1.1e-96
CCDS43009.2 RFPL2 gene_id:10739|Hs108|chr22 ( 378) 1762 347.1 1.2e-95
CCDS46201.1 RFPL4A gene_id:342931|Hs108|chr19 ( 287) 1150 229.9 1.8e-60
CCDS59425.1 RFPL4AL1 gene_id:729974|Hs108|chr19 ( 287) 1149 229.7 2.1e-60
CCDS34515.1 RFPL4B gene_id:442247|Hs108|chr6 ( 263) 554 115.9 3.6e-26
CCDS10498.1 MEFV gene_id:4210|Hs108|chr16 ( 781) 505 106.9 5.2e-23
CCDS4654.1 TRIM27 gene_id:5987|Hs108|chr6 ( 513) 495 104.8 1.4e-22
CCDS4611.1 BTN3A3 gene_id:10384|Hs108|chr6 ( 584) 495 104.9 1.6e-22
CCDS4612.2 BTN3A3 gene_id:10384|Hs108|chr6 ( 535) 486 103.1 4.9e-22
CCDS44525.1 TRIM21 gene_id:6737|Hs108|chr11 ( 475) 482 102.3 7.7e-22
CCDS47388.1 BTN3A1 gene_id:11119|Hs108|chr6 ( 461) 471 100.2 3.2e-21
CCDS4608.1 BTN3A1 gene_id:11119|Hs108|chr6 ( 513) 471 100.3 3.5e-21
CCDS31048.1 TRIM11 gene_id:81559|Hs108|chr1 ( 468) 455 97.2 2.7e-20
CCDS56405.1 BTN2A1 gene_id:11120|Hs108|chr6 ( 466) 454 97.0 3.1e-20
CCDS4613.1 BTN2A1 gene_id:11120|Hs108|chr6 ( 527) 454 97.0 3.4e-20
CCDS56403.1 BTN2A2 gene_id:10385|Hs108|chr6 ( 313) 450 96.0 4e-20
CCDS34378.1 TRIM39 gene_id:56658|Hs108|chr6 ( 488) 451 96.4 4.8e-20
CCDS4607.1 BTN2A2 gene_id:10385|Hs108|chr6 ( 407) 450 96.1 4.8e-20
CCDS34377.1 TRIM39 gene_id:56658|Hs108|chr6 ( 518) 451 96.4 5e-20
CCDS4606.1 BTN2A2 gene_id:10385|Hs108|chr6 ( 523) 450 96.2 5.7e-20
CCDS4614.1 BTN1A1 gene_id:696|Hs108|chr6 ( 526) 450 96.2 5.8e-20
CCDS3851.1 TRIML1 gene_id:339976|Hs108|chr4 ( 468) 448 95.8 6.9e-20
CCDS31356.1 TRIM68 gene_id:55128|Hs108|chr11 ( 485) 420 90.5 2.9e-18
CCDS475.1 ERMAP gene_id:114625|Hs108|chr1 ( 475) 414 89.3 6.4e-18
CCDS1636.1 TRIM58 gene_id:25893|Hs108|chr1 ( 486) 402 87.0 3.2e-17
CCDS76745.1 TRIM69 gene_id:140691|Hs108|chr15 ( 263) 397 85.8 4e-17
CCDS76746.1 TRIM69 gene_id:140691|Hs108|chr15 ( 279) 397 85.8 4.2e-17
CCDS73719.1 TRIM69 gene_id:140691|Hs108|chr15 ( 296) 397 85.9 4.3e-17
CCDS10114.1 TRIM69 gene_id:140691|Hs108|chr15 ( 341) 397 85.9 4.8e-17
CCDS32220.1 TRIM69 gene_id:140691|Hs108|chr15 ( 500) 397 86.1 6.3e-17
CCDS4568.1 TRIM38 gene_id:10475|Hs108|chr6 ( 465) 393 85.3 1e-16
CCDS81297.1 TRIM62 gene_id:55223|Hs108|chr1 ( 354) 380 82.7 4.7e-16
CCDS376.1 TRIM62 gene_id:55223|Hs108|chr1 ( 475) 380 82.8 5.8e-16
CCDS4463.1 TRIM7 gene_id:81786|Hs108|chr5 ( 303) 369 80.5 1.8e-15
CCDS43414.1 TRIM7 gene_id:81786|Hs108|chr5 ( 329) 369 80.5 1.9e-15
CCDS4460.2 BTNL9 gene_id:153579|Hs108|chr5 ( 535) 370 80.9 2.4e-15
CCDS4462.1 TRIM7 gene_id:81786|Hs108|chr5 ( 511) 369 80.7 2.6e-15
CCDS34654.1 TRIM50 gene_id:135892|Hs108|chr7 ( 487) 349 76.9 3.6e-14
CCDS3808.1 TRIM60 gene_id:166655|Hs108|chr4 ( 471) 344 75.9 6.8e-14
CCDS1571.1 TRIM17 gene_id:51127|Hs108|chr1 ( 477) 343 75.7 7.8e-14
CCDS3850.2 TRIML2 gene_id:205860|Hs108|chr4 ( 437) 341 75.3 9.6e-14
CCDS54959.1 BTNL8 gene_id:79908|Hs108|chr5 ( 316) 320 71.2 1.2e-12
CCDS53693.1 TRIM64B gene_id:642446|Hs108|chr11 ( 449) 321 71.5 1.4e-12
CCDS54958.1 BTNL8 gene_id:79908|Hs108|chr5 ( 375) 320 71.2 1.4e-12
CCDS54957.1 BTNL8 gene_id:79908|Hs108|chr5 ( 384) 320 71.2 1.4e-12
CCDS43413.1 BTNL8 gene_id:79908|Hs108|chr5 ( 500) 320 71.3 1.7e-12
CCDS60930.1 TRIM49D1 gene_id:399939|Hs108|chr11 ( 452) 314 70.2 3.5e-12
>>CCDS13857.2 RFPL1 gene_id:5988|Hs108|chr22 (317 aa)
initn: 1254 init1: 1226 opt: 2164 Z-score: 2247.1 bits: 424.0 E(32554): 7.6e-119
Smith-Waterman score: 2164; 99.1% identity (99.1% similar) in 317 aa overlap (1-316:1-317)
10 20 30 40 50 60
pF1KE1 MKRLSLVTTNRLSPHGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MKRLSLVTTNRLSPHGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRM
70 80 90 100 110 120
130 140 150 160 170
pF1KE1 RKFQVDTTLDADTANNFL-ISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRH
:::::: ::::::::::: :::::::::::::::::::::::::::::::::::::::::
CCDS13 RKFQVDMTLDADTANNFLLISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRH
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE1 YWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDR
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE1 KLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPSNGDKSVLSICP
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
CCDS13 KLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPPNGDKSVLSICP
250 260 270 280 290 300
300 310
pF1KE1 VINPGTTDAPVHPGEAK
:::::::::::::::::
CCDS13 VINPGTTDAPVHPGEAK
310
>>CCDS43011.1 RFPL3 gene_id:10738|Hs108|chr22 (317 aa)
initn: 1079 init1: 1079 opt: 1966 Z-score: 2042.4 bits: 386.1 E(32554): 1.9e-107
Smith-Waterman score: 1966; 90.9% identity (96.5% similar) in 317 aa overlap (1-316:1-317)
10 20 30 40 50 60
pF1KE1 MKRLSLVTTNRLSPHGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVC
::::::::::::::.::::::::::::::::::::::::::::::::::::::::::.::
CCDS43 MKRLSLVTTNRLSPQGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCTVC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRM
.:::::::::::::::::::::::::.:::::. :::::.::::::::::::::::::::
CCDS43 LKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMNPRM
70 80 90 100 110 120
130 140 150 160 170
pF1KE1 RKFQVDTTLDADTANNFL-ISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRH
:::::: ::::::::::: ::::::::::: :::::::::::::::.:::::::::::::
CCDS43 RKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTCGRH
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE1 YWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDR
:::::::::::::::::::::: ::.:.:::: :::::::::::::::::::::::.:::
CCDS43 YWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLLVDR
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE1 KLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPSNGDKSVLSICP
::::::::::::::::::::::.::::::::::::::::. :.:: : :::..::::::
CCDS43 KLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLSICP
250 260 270 280 290 300
300 310
pF1KE1 VINPGTTDAPVHPGEAK
..: :::::::.:::::
CCDS43 LMNSGTTDAPVRPGEAK
310
>>CCDS46694.1 RFPL2 gene_id:10739|Hs108|chr22 (317 aa)
initn: 1075 init1: 1075 opt: 1930 Z-score: 2005.2 bits: 379.2 E(32554): 2.3e-105
Smith-Waterman score: 1930; 89.9% identity (95.3% similar) in 317 aa overlap (1-316:1-317)
10 20 30 40 50 60
pF1KE1 MKRLSLVTTNRLSPHGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVC
::::::::::::::::::. ::::::::::::::::::::::::::::::::::::::::
CCDS46 MKRLSLVTTNRLSPHGNFFTLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRM
.::::::::::::::::::: ::::.::::: . ::::::::::::::::::::::::::
CCDS46 LKCINSLQKEPHGEDLLCCCSSMVSRKNKIRRNRQLERLASHIKELEPKLKKILQMNPRM
70 80 90 100 110 120
130 140 150 160 170
pF1KE1 RKFQVDTTLDADTANNFL-ISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRH
:::::: ::::.:::::: ::::::::::: : :::::::::::::.:::::::::::::
CCDS46 RKFQVDMTLDANTANNFLLISDDLRSVRSGRIRQNRQDLAERFDVSVCILGSPRFTCGRH
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE1 YWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDR
::::::::::::::::::::::::::.:::: ::::::::::.::::.:::::::::::
CCDS46 CWEVDVGTSTEWDLGVCRESVHRKGRIQLTTELGFWTVSLRDGGRLSATTVPLTFLFVDR
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE1 KLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPSNGDKSVLSICP
::::::::::::::::::::::.::::::::::::::::. :.:: : :::..::::::
CCDS46 KLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSVPPNGDQGVLSICP
250 260 270 280 290 300
300 310
pF1KE1 VINPGTTDAPVHPGEAK
..: :::::::.:::::
CCDS46 LMNSGTTDAPVRPGEAK
310
>>CCDS13904.1 RFPL3 gene_id:10738|Hs108|chr22 (288 aa)
initn: 1079 init1: 1079 opt: 1779 Z-score: 1849.5 bits: 350.3 E(32554): 1.1e-96
Smith-Waterman score: 1779; 90.3% identity (96.2% similar) in 288 aa overlap (30-316:1-288)
10 20 30 40 50 60
pF1KE1 MKRLSLVTTNRLSPHGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVC
::::::::::::::::::::::::::::.::
CCDS13 MAALFQEASSCPVCSDYLEKPMSLECGCTVC
10 20 30
70 80 90 100 110 120
pF1KE1 FKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRM
.:::::::::::::::::::::::::.:::::. :::::.::::::::::::::::::::
CCDS13 LKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMNPRM
40 50 60 70 80 90
130 140 150 160 170
pF1KE1 RKFQVDTTLDADTANNFL-ISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRH
:::::: ::::::::::: ::::::::::: :::::::::::::::.:::::::::::::
CCDS13 RKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTCGRH
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE1 YWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDR
:::::::::::::::::::::: ::.:.:::: :::::::::::::::::::::::.:::
CCDS13 YWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLLVDR
160 170 180 190 200 210
240 250 260 270 280 290
pF1KE1 KLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPSNGDKSVLSICP
::::::::::::::::::::::.::::::::::::::::. :.:: : :::..::::::
CCDS13 KLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLSICP
220 230 240 250 260 270
300 310
pF1KE1 VINPGTTDAPVHPGEAK
..: :::::::.:::::
CCDS13 LMNSGTTDAPVRPGEAK
280
>>CCDS43009.2 RFPL2 gene_id:10739|Hs108|chr22 (378 aa)
initn: 1075 init1: 1075 opt: 1762 Z-score: 1830.5 bits: 347.1 E(32554): 1.2e-95
Smith-Waterman score: 1762; 89.7% identity (95.2% similar) in 290 aa overlap (28-316:89-378)
10 20 30 40 50
pF1KE1 MKRLSLVTTNRLSPHGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGC
::::::::::::::::::::::::::::::
CCDS43 TNKRPSCAPSPQDLSAQWKQLEDRGASSRRVDMAALFQEASSCPVCSDYLEKPMSLECGC
60 70 80 90 100 110
60 70 80 90 100 110
pF1KE1 AVCFKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMN
:::.::::::::::::::::::: ::::.::::: . :::::::::::::::::::::::
CCDS43 AVCLKCINSLQKEPHGEDLLCCCSSMVSRKNKIRRNRQLERLASHIKELEPKLKKILQMN
120 130 140 150 160 170
120 130 140 150 160 170
pF1KE1 PRMRKFQVDTTLDADTANNFL-ISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTC
::::::::: ::::.:::::: ::::::::::: : :::::::::::::.::::::::::
CCDS43 PRMRKFQVDMTLDANTANNFLLISDDLRSVRSGRIRQNRQDLAERFDVSVCILGSPRFTC
180 190 200 210 220 230
180 190 200 210 220 230
pF1KE1 GRHYWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLF
::: ::::::::::::::::::::::::::.:::: ::::::::::.::::.::::::::
CCDS43 GRHCWEVDVGTSTEWDLGVCRESVHRKGRIQLTTELGFWTVSLRDGGRLSATTVPLTFLF
240 250 260 270 280 290
240 250 260 270 280 290
pF1KE1 VDRKLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPSNGDKSVLS
:::::::::::::::::::::::::.::::::::::::::::. :.:: : :::..:::
CCDS43 VDRKLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSVPPNGDQGVLS
300 310 320 330 340 350
300 310
pF1KE1 ICPVINPGTTDAPVHPGEAK
:::..: :::::::.:::::
CCDS43 ICPLMNSGTTDAPVRPGEAK
360 370
>>CCDS46201.1 RFPL4A gene_id:342931|Hs108|chr19 (287 aa)
initn: 705 init1: 705 opt: 1150 Z-score: 1199.1 bits: 229.9 E(32554): 1.8e-60
Smith-Waterman score: 1150; 58.5% identity (83.0% similar) in 282 aa overlap (30-310:1-282)
10 20 30 40 50 60
pF1KE1 MKRLSLVTTNRLSPHGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVC
:: :.. :::: ::. ..:.:: : :
CCDS46 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACC
10 20 30
70 80 90 100 110 120
pF1KE1 FKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRM
..:.::::::: :: ::: ::.::::. :.:...:. :.: :::::::::..: :::::
CCDS46 LQCLNSLQKEPDGEGLLCRFCSVVSQKDDIKPKYKLRALVSIIKELEPKLKSVLTMNPRM
40 50 60 70 80 90
130 140 150 160 170
pF1KE1 RKFQVDTTLDADTANNFLI-SDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRH
:::::: :.:.:::::.:: :.:::: ::: ..:::.. :::::...:.::.:::: :::
CCDS46 RKFQVDMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRH
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE1 YWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDR
::::::::: ::.:::.:::.:.:.: :..:.:: ::. :.:. ..:::::.: :.:.
CCDS46 YWEVDVGTSQVWDVGVCKESVNRQGKIVLSSEHGFLTVGCREGKVFAASTVPMTPLWVSP
160 170 180 190 200 210
240 250 260 270 280 290
pF1KE1 KLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPSNGDKSVLSICP
.:.:::::::.::....:... : :.::: . . :: . ::: :. :.:.::::
CCDS46 QLHRVGIFLDVGMRSIAFYNVSDGCHIYTFIEIPVCEPWRPFFAHKRGSQDDQSILSICS
220 230 240 250 260 270
300 310
pF1KE1 VINPGTTDAPVHPGEAK
::::....:::
CCDS46 VINPSAASAPVSSEGK
280
>>CCDS59425.1 RFPL4AL1 gene_id:729974|Hs108|chr19 (287 aa)
initn: 704 init1: 704 opt: 1149 Z-score: 1198.1 bits: 229.7 E(32554): 2.1e-60
Smith-Waterman score: 1149; 58.5% identity (83.0% similar) in 282 aa overlap (30-310:1-282)
10 20 30 40 50 60
pF1KE1 MKRLSLVTTNRLSPHGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVC
:: :.. :::: ::. ..:.:: : :
CCDS59 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACC
10 20 30
70 80 90 100 110 120
pF1KE1 FKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRM
..:.::::::: :: ::: ::.::::. :.:...:. :.: :::::::::..: :::::
CCDS59 LQCLNSLQKEPDGEGLLCRFCSVVSQKDDIKPKYKLRALVSIIKELEPKLKSVLTMNPRM
40 50 60 70 80 90
130 140 150 160 170
pF1KE1 RKFQVDTTLDADTANNFLI-SDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRH
:::::: :.:.:::::.:: :.:::: ::: ..:::.. :::::...:.::.:::: :::
CCDS59 RKFQVDMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRH
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE1 YWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDR
::::::::: ::.:::.:::.:.:.:.:..:.:: ::. :.:. ..:::::.: :.:.
CCDS59 YWEVDVGTSQVWDVGVCKESVNRQGKIELSSEHGFLTVGCREGKVFAASTVPMTPLWVSP
160 170 180 190 200 210
240 250 260 270 280 290
pF1KE1 KLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPSNGDKSVLSICP
.:.:::::::.::....:... : :. :: . . :: . ::: :. :.:.::::
CCDS59 QLHRVGIFLDVGMRSIAFYNVSDGCHINTFIEIPVCEPWRPFFAHKRGSQDDQSILSICS
220 230 240 250 260 270
300 310
pF1KE1 VINPGTTDAPVHPGEAK
::::.:..:::
CCDS59 VINPSTASAPVSSEGK
280
>>CCDS34515.1 RFPL4B gene_id:442247|Hs108|chr6 (263 aa)
initn: 535 init1: 176 opt: 554 Z-score: 583.3 bits: 115.9 E(32554): 3.6e-26
Smith-Waterman score: 554; 36.4% identity (64.7% similar) in 272 aa overlap (30-299:1-263)
10 20 30 40 50 60
pF1KE1 MKRLSLVTTNRLSPHGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVC
:: .: ::::: :.. .:: : . :
CCDS34 MAKRLQAELSCPVCLDFFSCSISLSCTHVFC
10 20 30
70 80 90 100 110 120
pF1KE1 FKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRM
: ::. : : .: : : . .. ::. :. :. . .:.. :.. ..
CCDS34 FDCIQRYILENHDFRAMCPLCRDVVKVPALEE-WQVSVLTLMTKQHNSRLEQSLHVREEL
40 50 60 70 80 90
130 140 150 160 170
pF1KE1 RKFQVDTTLDADTANNFLI-SDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRH
:.:. :.:::: ::...:. :.::::.. : . ..::.. .. :.::.: :. :.:
CCDS34 RHFREDVTLDAATASSLLVFSNDLRSAQ--C-KKIHHDLTKDPRLA-CVLGTPCFSSGQH
100 110 120 130 140
180 190 200 210 220 230
pF1KE1 YWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDR
::::.:: :.::::.: . ::. : :.::: .:.. :. . :.: : . ..
CCDS34 YWEVEVGEVKSWSLGVCKEPADRKSN-DLFPEHGFW-ISMKAGA-IHANT-HLERIPASP
150 160 170 180 190 200
240 250 260 270 280 290
pF1KE1 KLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPSNGDK-SVLSIC
.:.::::::: .....:::.... .:: . . : : :: ..:.. .::.::
CCDS34 RLRRVGIFLDADLEEIQFFDVDNNVLIYTHDGFFSLELLCPFFCLELLGEGESGNVLTIC
210 220 230 240 250 260
300 310
pF1KE1 PVINPGTTDAPVHPGEAK
:
CCDS34 P
>>CCDS10498.1 MEFV gene_id:4210|Hs108|chr16 (781 aa)
initn: 491 init1: 442 opt: 505 Z-score: 526.6 bits: 106.9 E(32554): 5.2e-23
Smith-Waterman score: 505; 43.4% identity (70.9% similar) in 182 aa overlap (125-304:598-779)
100 110 120 130 140 150
pF1KE1 QLERLASHIKELEPKLKKILQMNPRMRKFQVDTTLDADTAN-NFLISDDLRSVRSGCITQ
:.. :::.:: :...::::.::: : .
CCDS10 EKSTKYFSETLRSEMEMFNVPELIGAQAHAVNVILDAETAYPNLIFSDDLKSVRLGNKWE
570 580 590 600 610 620
160 170 180 190 200 210
pF1KE1 NRQDLAERFDVSICILGSPRFTCGRHYWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERG
: .::: : .:::: : ::.::::.:: .: : ::.:. :. ::: . :. : :
CCDS10 RLPDGPQRFDSCIIVLGSPSFLSGRRYWEVEVGDKTAWILGACKTSISRKGNMTLSPENG
630 640 650 660 670 680
220 230 240 250 260 270
pF1KE1 FWTVSLRDGSRLSASTVPLTFLFVDRKLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVS
.:.: . .. .::.:: : :.. . .:::::.:. . ..::... . ::.::: : :
CCDS10 YWVVIMMKENEYQASSVPPTRLLIKEPPKRVGIFVDYRVGSISFYNVTARSHIYTFASCS
690 700 710 720 730 740
280 290 300 310
pF1KE1 AEEPLHLFFAPPSPSNGDKSV-LSICPVINPGTTDAPVHPGEAK
::. .:.: . ..: ... :.:::: . :
CCDS10 FSGPLQPIFSPGTRDGGKNTAPLTICPVGGQGPD
750 760 770 780
>>CCDS4654.1 TRIM27 gene_id:5987|Hs108|chr6 (513 aa)
initn: 596 init1: 437 opt: 495 Z-score: 518.6 bits: 104.8 E(32554): 1.4e-22
Smith-Waterman score: 495; 40.3% identity (68.9% similar) in 206 aa overlap (97-300:289-492)
70 80 90 100 110 120
pF1KE1 LQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRMRKFQVD
: : . .... ..:: .. . . ..::
CCDS46 ERIRIPEPWITPPDLQEKIHIFAQKCLFLTESLKQFTEKMQSDMEKIQELR-EAQLYSVD
260 270 280 290 300 310
130 140 150 160 170 180
pF1KE1 TTLDADTAN-NFLISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRHYWEVDV
.::: ::: ....::.::.:: . . :. : :::.. :.:::: : :::::::.:
CCDS46 VTLDPDTAYPSLILSDNLRQVRYSYLQQDLPDNPERFNLFPCVLGSPCFIAGRHYWEVEV
320 330 340 350 360 370
190 200 210 220 230 240
pF1KE1 GTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDRKLQRVG
: ...: .:::..:: ::: . . . :::.::: :.. : : :.: : . :::::
CCDS46 GDKAKWTIGVCEDSVCRKGGVTSAPQNGFWAVSLWYGKEYWALTSPMTALPLRTPLQRVG
380 390 400 410 420 430
250 260 270 280 290 300
pF1KE1 IFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPSNGDKSV-LSICPVINPG
::::. .:::... :..:: .. :.. .:. : :.: ... : :::.
CCDS46 IFLDYDAGEVSFYNVTERCHTFTFSHATFCGPVRPYFSL-SYSGGKSAAPLIICPMSGID
440 450 460 470 480 490
310
pF1KE1 TTDAPVHPGEAK
CCDS46 GFSGHVGNHGHSMETSP
500 510
316 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 03:39:47 2016 done: Mon Nov 7 03:39:47 2016
Total Scan time: 2.680 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]